Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq9 95.1 1e-14 seq1 95.1 1e-14 seq4 93.3 4e-14 seq45 89.7 5e-13 seq12 89.7 5e-13 >seq2 Length=1153633 Score = 114 bits (126), Expect = 1e-20 Identities = 125/163 (77%), Gaps = 10/163 (6%) Strand=Plus/Plus Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 || ||||| || || |||||| ||||||| || ||||||||||||||||| |||||| Sbjct 770675 GGTATGAATGCCAAGCTCATGTGTCAGTACATTGAATTTGTGGCGGATCGTCTTTTGGTG 770734 Query 52731 CAGCTCGG-GCAGCCAA--AGTAC--TTCAACGCTCGCAATCCGTTTGAGTTTATGAACA 52785 || || | || ||| | || |||||| |||||| ||||| |||||| ||| Sbjct 770735 GCTCTTGGCGTAGACAAGCATTATCATTCAAC-----CAATCCCTTTGACTTTATGGACA 770789 Query 52786 ACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||||| ||| |||||||||||||||| || ||||||||||| Sbjct 770790 TGATTTCTCTTCAGGGCAAGACCAACTTCTTTGAGAAGCGAGT 770832 >seq9 Length=614693 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || || || | || ||||||| | |||||||||||||| ||||| ||| Sbjct 95446 CCACCACGTAAGCGAAGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAA 95387 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || |||||||| || | | || ||||| || ||||||||||| Sbjct 95386 AGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGA 95327 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||||| || | | ||| | | || | || || || Sbjct 95326 ATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACT 95267 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || ||||| || ||||| Sbjct 95266 TCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 95220 >seq1 Length=3088551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| || || |||||||| || | | Sbjct 605758 GACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCATCTTCAAGTTGTTTGCCTGCA 605699 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| || || || || || || ||||| ||||| || || | || | Sbjct 605698 AAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGTTCTTGACG 605639 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | ||||||||||| | || | || || ||||| || || || Sbjct 605638 TTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTG 605579 Query 138601 ACAAAAATCTGCATG 138615 || || || |||||| Sbjct 605578 ACGAAGATTTGCATG 605564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||| || || |||||| || |||||||| || || | | Sbjct 606214 GACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCATCTTCGAGTTGCTTTCCTGCA 606155 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | || || ||||| ||||| || ||||| || || ||| || | || | Sbjct 606154 AAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTGTTCTTGACA 606095 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | || | ||||| || || | || | || || ||||||| ||| || Sbjct 606094 TTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTG 606035 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 606034 ACAAAGATCTGCAT 606021 >seq4 Length=1091430 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||||||||| || |||||| || || |||||||| || | | Sbjct 753908 GATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCAAGTTGTTTGCCTGCA 753849 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| || ||||| ||||| |||||||| ||||| ||| || | || | Sbjct 753848 AAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGTTCTTGACA 753789 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | | || | ||||| || || | || | || || ||||||| ||| || Sbjct 753788 TTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTCTTGCCAGTCAAAGTCTTG 753729 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 753728 ACAAAGATTTGCAT 753715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || || |||||| || || |||||||| || | | Sbjct 753452 GACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCTTCAAGTTGTTTGCCTGCA 753393 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| || ||||| ||||| || ||||| || || ||| || | || | Sbjct 753392 AAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTGTTCTTGACG 753333 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | ||||| || || | || | || || || || || || || Sbjct 753332 TTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTCTTGCCGGTAAGTGTCTTG 753273 Query 138601 ACAAAAATCTGCATGG 138616 ||||| || ||||||| Sbjct 753272 ACAAAGATTTGCATGG 753257 >seq45 Length=1879501 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 || || || ||||| ||| | || || || || | || || || || ||| | || Sbjct 1418311 GAAGCTGTTGCTATTGAACAAGAATTCTTGACTGATGCTCTTCCCGTGTCCCTGATTGGT 1418252 Query 52674 ATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 ||||| || || |||||| | ||||| || ||||| || ||||| || | || | Sbjct 1418251 ATGAATGCCAAGCTCATGTGTCAATACATTGAATTTGTTGCCGATCGCTTGCTTGT-CGC 1418193 Query 52734 CTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 || ||| | | ||| | | ||| ||| |||||| ||||| |||||| ||| || || Sbjct 1418192 CTTGGGTCTCAACAAGCATTACAATGCTACCAATCCATTTGACTTTATGGACATGATCTC 1418133 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||| | ||||| |||||||||||||| ||||| || Sbjct 1418132 TCTTCAAGGCAAAACCAACTTTTTCGAAAAGCGTGT 1418097 >seq12 Length=2893134 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| || ||||| | ||| || ||||||||||| ||| |||||| |||||||||||| Sbjct 1077880 TACTCGACAATCTCTGTGCAAAGATTGCTGCATTTGATGGTGCCCAAGTTTTGCTGATTG 1077939 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 153761 |||||||||||| || || ||| | | |||| | || || || || || ||| | | Sbjct 1077940 GATTTGCGATTGCATGCATCCTTGTATAACATGAATGGACCACCAGTTTCAGTTTGTGCT 1077999 Query 153762 TCGACGATA 153770 || | |||| Sbjct 1078000 TCCAAGATA 1078008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261940957280