Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9 122 8e-23 seq12 86.0 6e-12 >seq9 Length=614693 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||| || | ||||||||||| || ||||| |||||||||||||||||| Sbjct 95446 CCACCACGTAAGCGAAGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAA 95387 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || || ||||| |||||| | || | || ||||| || ||||| Sbjct 95386 AGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGA 95327 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| || ||||||| | ||| | | || | || ||| Sbjct 95326 ATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACT 95267 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || ||||| || ||||| || ||||| Sbjct 95266 TCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 95220 >seq12 Length=2893134 Score = 86.0 bits (94), Expect = 6e-12 Identities = 191/282 (68%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 147268 GTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATT 147327 |||| |||||||| || ||| ||||||||| || || |||||| || | | | Sbjct 1078483 GTCTCATAGATGCCTTCAATGGAGTCTTCCTTCATAGTCAACAAGAAACATGATGATAAT 1078542 Query 147328 TGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAAC--GTGCCCA 147385 || |||||| ||||| || || || || || ||||| || ||||| | || | Sbjct 1078543 TGTGGACGAGGTGTGCCGGCATTGAAAAGTGTTGGACTGGCATGTGTGAAATAGCGCTCG 1078602 Query 147386 GACTCATCAATTGATACGTTTCAATGGCGCTCAT-AACGTCATCGCCGTGAATGGCCAGG 147444 ||| ||||| | || ||||||||||| ||| || ||| || || ||||| | | Sbjct 1078603 GAC--ATCAAGTTGTAAGTTTCAATGGC-AGCATCAATGTCTTCACCATGAATACCAACT 1078659 Query 147445 GCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGA 147504 || || ||||| | |||||| || || ||||| |||||| | |||||| || | | | Sbjct 1078660 GCAACACGCATCAACATGTGTTGTGGACGTTCTGCAATCTTGCCATTGATCTTGAGCAAA 1078719 Query 147505 TATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGTAGTCG 147546 || | || || ||||||||||| | |||||| || Sbjct 1078720 TAGGAACGCTCCAATGTCTTGAAACCAAAAAAGTTGTAGCCG 1078761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500360161760