Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq1 109 5e-19 seq9 98.7 9e-16 seq34 86.0 6e-12 >seq4 Length=1091430 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || ||||| | || | ||| || | |||| Sbjct 753461 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCTTCAAGTTGT 753402 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | ||||| ||||||||||| || ||||||||||| |||||||| || || Sbjct 753401 TTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTG 753342 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 | |||| ||| | || || |||||||||||||| | ||| | || |||||||| Sbjct 753341 TTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTCTTGCCGGTA 753282 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||| Sbjct 753281 AGTGTCTTGACAAAGATTTGCAT 753259 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || | || ||| || | |||| Sbjct 753917 TGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCAAGTTGT 753858 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | ||||| ||||||||||| || ||||| ||||| || ||||| || || Sbjct 753857 TTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTG 753798 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 | |||| ||| | | || |||||||| ||||| | ||||| || ||||| || Sbjct 753797 TTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTCTTGCCAGTC 753738 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || ||||| |||||||| Sbjct 753737 AAAGTCTTGACAAAGATTTGCAT 753715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | |||||| || || || || || ||||||||||| || || || Sbjct 754169 CCGCCACGGAGACGCAACACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAA 754110 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | ||| || || ||| | || | |||||||| || || || Sbjct 754109 AGAGTACGACCATCTTCAAGTTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGTGGG 754050 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| |||||||| || || | |||| ||| | | || ||||| || ||| Sbjct 754049 ATACCTTCCTTATCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGATTCAACT 753990 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||| | || ||||| || | ||| || ||||| |||||||| Sbjct 753989 TCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753943 >seq1 Length=3088551 Score = 109 bits (120), Expect = 5e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || || || || || ||||||||||||||||| || || |||| | || ||| | Sbjct 606457 ACAAGGTGAAGAGTGGATTCCTTTTGGATATTGTAGTC--TGACAAAGTACGACCATCCT 606400 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | |||||| ||||| | ||||| ||||||||||| || ||||||||||| ||||||| Sbjct 606399 CAAGTTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTT 606340 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || || | |||| || | | || || ||||| ||||| | ||| | || | Sbjct 606339 GGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCT 606280 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || | ||| || ||||| || ||||| Sbjct 606279 TGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606249 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || |||||||| || || ||||| | || | ||| || | ||| Sbjct 606223 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCATCTTCGAGTTGC 606164 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 |||||||| | ||||| ||||||||||| || ||||||||||| |||||||| || || Sbjct 606163 TTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTG 606104 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 | |||| || | | || || ||||| ||||| | ||| | || ||||| || Sbjct 606103 TTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTC 606044 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || ||||| || ||||| Sbjct 606043 AAAGTCTTGACAAAGATCTGCAT 606021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 || || || ||||||||||||||||| || || |||| | || ||| || | || Sbjct 605995 TGAAGAGTAGATTCCTTTTGGATATTGTAGTC--TGACAAAGTACGACCATCTTCAAGTT 605938 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| ||||| | || | || |||||||| || ||||||||||| ||||| || || | Sbjct 605937 GTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGGATCT 605878 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | | |||| ||| | | || || ||||| ||||| | ||| | || ||||| | Sbjct 605877 TGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAG 605818 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | | ||| || ||||| || ||||| Sbjct 605817 TCAAAGTCTTGACAAAGATCTGCAT 605793 >seq9 Length=614693 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| | ||| | || || |||||||| ||||| |||||| || || | || ||| Sbjct 95429 CACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCG--GAAAGTGTACGACCATCT 95372 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | |||||| || ||| | || | |||||||||||||| ||||| ||||| || || Sbjct 95371 TCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCC 95312 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || || ||||| |||| ||| | | || || || || ||||| | || | || Sbjct 95311 TGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTC 95252 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| |||||||| Sbjct 95251 TTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 95220 >seq34 Length=2204315 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || || | || | ||| || | ||| Sbjct 1854143 TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGACCATCTTCAAGTTGC 1854084 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| ||||||||||| || ||||||||||| ||||||||||| ||| Sbjct 1854083 TTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGAATCTTT 1854024 Query 45258 TGTTTGA 45264 || |||| Sbjct 1854023 TGCTTGA 1854017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002781897040