Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9 149 1e-30 seq1 141 2e-28 seq4 132 1e-25 seq34 129 1e-24 seq12 114 3e-20 >seq9 Length=614693 Score = 149 bits (164), Expect = 1e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||||||||||||||| | ||||| || | | || | |||||||| || || || || Sbjct 95417 AGTCGACTCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCTTCAAGTTGTTTGCC 95358 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 ||||| |||||||| |||||||||||| ||||||||| ||||| ||||||||||| Sbjct 95357 AGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTT 95298 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| ||| | | || | || |||||| ||||| ||||| ||||| || |||||||| Sbjct 95297 GACGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTCTTTCCAGTGAGAGT 95238 Query 199612 TTTCACAAAAATTTG 199626 || ||||| ||||| Sbjct 95237 CTTGACAAAGATTTG 95223 >seq1 Length=3088551 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| || |||||||||| |||||||| | |||||| Sbjct 606013 CGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTA 605954 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || || |||||||||||||||||||| ||| ||| ||| Sbjct 605953 CGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCT 605894 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| | ||| ||| ||| | | || | || || || ||||| Sbjct 605893 TCCTTATCCTGGATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAA 605834 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || ||||| || || Sbjct 605833 GTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTG 605796 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| ||||||||||| | ||||||||| | |||||| Sbjct 605785 CGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGTA 605726 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || || ||||||||||| ||||| || || ||| ||| Sbjct 605725 CGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCT 605666 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| | ||| ||| ||| | || || | || || || ||||| Sbjct 605665 TCCTTGTCTTGAATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAAG 605606 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || || || ||||| Sbjct 605605 GTGATAGTCTTGCCAGTAAGGGTCTTGACGAAGATTTG 605568 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| ||||||||||| | |||||| |||| |||||| Sbjct 606241 CGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTA 606182 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || |||||||| || ||||| | || |||||||| ||| ||| ||| Sbjct 606181 CGACCATCTTCGAGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCT 606122 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| | ||| || || | | || | || || || ||||| Sbjct 606121 TCCTTATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAA 606062 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || ||||| || || Sbjct 606061 GTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTG 606024 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| ||||| || |||||||||| |||||||| | |||||| Sbjct 606469 CGAAGACGAAGGACAAGGTGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGACAAAGTA 606410 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || || || || || ||||| | || |||||||| ||| ||| ||| Sbjct 606409 CGACCATCCTCAAGTTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCT 606350 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| | ||| || || | | || | || || || ||||| Sbjct 606349 TCCTTATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAA 606290 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || ||||| || || Sbjct 606289 GTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTG 606252 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| ||||||||||||| ||||||||||| | ||| Sbjct 483747 CGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTA 483688 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | |||||||| || ||||| || ||||| || | ||| |||||||| ||| Sbjct 483687 CGGCCATCTTCGAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCAGGA 483637 >seq4 Length=1091430 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| ||||||||||||| |||||| |||| |||||| Sbjct 753479 CGAAGACGAAGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTA 753420 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || || ||||| | ||| |||||||| ||| ||| ||| Sbjct 753419 CGACCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCT 753360 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| | ||| ||| ||| | || || | | || || ||||| Sbjct 753359 TCCTTATCTTGGATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAA 753300 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || ||||| ||||| Sbjct 753299 GTGATAGTCTTGCCGGTAAGTGTCTTGACAAAGATTTG 753262 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || ||||| ||||| ||||||||||||| ||||||||||| | ||| | |||||||| Sbjct 754151 ACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCTTCA 754092 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 || ||||| || ||||| |||||||| ||||| || || || ||||| || || Sbjct 754091 AGTTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATACCTTCCTTATCTTGG 754032 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| | ||| || ||| | | || | | ||| || ||||| ||||| ||||| Sbjct 754031 ATCTTGTTCTTGACATTTTCAATAGAATCAGAAGATTCAACTTCCAAAGTGATGGTCTTG 753972 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | ||| || ||||| ||||| Sbjct 753971 CCAGTCAAAGTCTTGACAAAGATTTG 753946 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| || |||||||||| ||||||||||| |||||| Sbjct 753935 CGAAGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTA 753876 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || || ||||| | ||| |||||||| ||| ||| ||| Sbjct 753875 CGGCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCT 753816 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| | ||| || ||| | | || | | || || ||||| Sbjct 753815 TCCTTGTCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAA 753756 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | ||| || ||||| ||||| Sbjct 753755 GTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTG 753718 >seq34 Length=2204315 Score = 129 bits (142), Expect = 1e-24 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| ||||||||||||| ||||||||||| |||||| Sbjct 1854161 CGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 1854102 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || ||||| || ||||| || | ||| |||||||| ||| ||| ||| Sbjct 1854101 CGACCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATGCCT 1854042 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554 || || |||||||||||||| || Sbjct 1854041 TCCTTATCTTGAATCTTTTGCTTGAC 1854016 >seq12 Length=2893134 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| ||||||||||||| |||||||||| |||||| Sbjct 1461607 CGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGACAAAGTA 1461548 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || ||||| || | ||| |||||||| ||| |||||| Sbjct 1461547 CGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATTCCC 1461488 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554 || || || ||||||||||| || Sbjct 1461487 TCCTTATCTTGGATCTTTTGCTTGAC 1461462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920482234958