Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9 118 1e-21 seq4 111 2e-19 seq1 105 8e-18 seq12 93.3 5e-14 >seq9 Length=614693 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || || || |||| ||||| || || |||||||| ||||| || || ||||| || Sbjct 95665 AAGCGTAATACCAAGTGCAACGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGG 95606 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| || ||||| ||||| ||||| ||||| || ||||| || | || | | ||| Sbjct 95605 CCGTCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCC 95546 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 ||||| ||||| ||||||| || | | | ||| ||||||||| || | ||| Sbjct 95545 TTGTCTTGAATCTTGTTCTTGACATTCTCAATAGAATCGGACGATTCCACTTCAAGTGTG 95486 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| || || || || |||||||||||||| Sbjct 95485 ATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 95448 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | ||| || | ||||| ||| || || ||||||||| |||||||| ||||| Sbjct 95446 CCACCACGTAAGCGAAGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAA 95387 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || || || ||||| ||||| || | || |||||||| | || Sbjct 95386 AGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGA 95327 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| | ||||| | | | | || ||||| || Sbjct 95326 ATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACT 95267 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| || || || || || || ||||||||||||||| || Sbjct 95266 TCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCATTGTG 95216 >seq4 Length=1091430 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | || |||||||||||| |||||||| || ||||| || | Sbjct 754158 ACGCAACACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACC 754099 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || |||||||| ||||| || | || ||||| || | || | | ||||| Sbjct 754098 ATCTTCAAGTTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATACCTTCCTT 754039 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || |||||| ||||||| | | | | || ||||| || |||| ||||| Sbjct 754038 ATCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGATTCAACTTCCAAAGTGAT 753979 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| |||| || || |||||||||||||| Sbjct 753978 GGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753943 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || | ||| || | || || || || ||||| || || Sbjct 753905 TCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCAAGTTGTTTGCCTGCAAAG 753846 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || |||||||| | || | | |||||||| |||||| ||||||| | Sbjct 753845 ATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGTTCTTGACATTT 753786 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | || || || || |||| || ||||| ||||| |||| || || ||| Sbjct 753785 TCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTCTTGCCAGTCAAAGTCTTGACA 753726 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 753725 AAGATTTGCAT 753715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| || || | ||| || | || || || || ||||| || || Sbjct 753450 CTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAA 753391 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || |||||||| | || | || ||||| || |||||| ||||||| | Sbjct 753390 GATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTGTTCTTGACGTT 753331 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || || |||| ||||| || ||||| || || || || || Sbjct 753330 TTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTCTTGCCGGTAAGTGTCTTGAC 753271 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 753270 AAAGATTTGCAT 753259 >seq1 Length=3088551 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||||||||||||||| || | ||| || | || || || || ||||| || || Sbjct 606439 TCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCCTCAAGTTGTTTGCCTGCAAAG 606380 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||||||| |||||||| | || | || ||||| || |||||| ||||||| || Sbjct 606379 ATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTGTTCTTGACATTC 606320 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | || || || || |||| ||||| || ||||| |||| || || ||| Sbjct 606319 TCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACA 606260 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 606259 AAGATCTGCAT 606249 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||||||||||||||| || | ||| || | || || || || ||||| || || Sbjct 605983 TCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAG 605924 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | || ||||| ||| |||||| ||||||| | Sbjct 605923 ATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGGATCTTGTTCTTGACGTTT 605864 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | || || || || |||| ||||| || ||||| |||| || || ||| Sbjct 605863 TCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACA 605804 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 605803 AAGATCTGCAT 605793 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||| || | ||| || | || || || || ||||| || || Sbjct 605756 CTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAA 605697 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || ||||| || | || | || |||||||| ||||| ||||||| | Sbjct 605696 GATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGTTCTTGACGTT 605637 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || ||||| |||| ||||| || ||||| || || || || || Sbjct 605636 TTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTGAC 605577 Query 46582 AAAGATTTGCATTTTG 46597 ||||||||||| ||| Sbjct 605576 GAAGATTTGCATGTTG 605561 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| || ||||| || | || ||||| |||||||| ||||| Sbjct 483718 CTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCGAGTTGCTTGCCAGCGAA 483659 Query 46462 TATCAAGCGCTGCTGGTC 46479 ||||| || |||||||| Sbjct 483658 AATCAAACGTTGCTGGTC 483641 >seq12 Length=2893134 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||||||||| || | ||| || | || ||||| |||||||| ||||| Sbjct 1461578 CTCCTTTTGGATATTGTAGTCAGACAAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAA 1461519 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||| || |||||||| | || | | |||||| || |||||| | ||||| Sbjct 1461518 AATCAAACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGGATCTTTTGCTTGA 1461463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237877154480