Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq45 116 4e-21 seq9 105 7e-18 seq2 93.3 4e-14 seq1 93.3 4e-14 seq4 82.4 8e-11 >seq45 Length=1879501 Score = 116 bits (128), Expect = 4e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 ||| |||||||| || || | || || || | ||||||||| || ||||| ||||| Sbjct 1418369 CAAACAAGCAAAATCAGTGTGAAGACCTTCATCACGGGAAATGAGCTCATTGCTAAAAGT 1418428 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 |||||| ||||| || || ||||| ||||||||||| |||| || ||| ||| ||||| Sbjct 1418429 CAAGCCTGGCATAAGACCACGTTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAAAA 1418488 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 ||||| ||| || || || || ||||| || || || || Sbjct 1418489 GAAGATGCCTTCTACAGCAGCAAAAGCAACAAGACGTTC 1418527 >seq9 Length=614693 Score = 105 bits (116), Expect = 7e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || ||||| || || |||||||| | || || || | | Sbjct 95219 AATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACATTGGAAGTAGAATCATC 95278 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | ||||| | || |||| |||| ||||| || |||||||| | |||| Sbjct 95279 TGATTCTATTGAAAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACC 95337 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || ||||||| ||| |||||||| || || || | || || || ||| |||| Sbjct 95338 AGCAACGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGTCGTACACTTTCCGATTACA 95397 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 | || |||||||| |||| | ||||||||||| || || Sbjct 95398 ATATTCAAAAGGAGTCGACTTTACATTTGGTGCTTCGCTT 95437 >seq2 Length=1153633 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || ||||| ||| ||| || || || || | ||||| || ||||| ||||| || | Sbjct 770556 CATGCAAAATCGGTATGTAATCCTTCATCACGTGAAATAAGCTCGTTACTGAATGTAAGA 770497 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || ||||| | || || |||||||||||||| || | || ||| || ||||||||| Sbjct 770496 CCTGGCATCAATCCACGCTTTTTGAGCCAAAAGATAGAAGCAAAAGAACCAGAAAAGAAG 770437 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | ||| || || || ||||| || || || || || | || | | | ||| | | Sbjct 770436 ATGCCTTCCACTGCAGCGAATGCAACTAGACGTTCAGCAAA---AGATCCATTGGAAGAG 770380 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCTT 133105 ||||| || | |||||||| ||||| ||||| Sbjct 770379 ATCCATCGAAATGCCCATTCTGCCTTCTTCTT 770348 >seq1 Length=3088551 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 38231 ACTCTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGA 38290 ||||||| || | ||||||| ||||| || || || || ||||| || |||||| | || Sbjct 605554 ACTCTTTCAACA--TGCAAATCTTCGTCAAGACCCTTACTGGCAAGACTATCACCTTGGA 605611 Query 38291 CGTCGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGA 38348 || ||| | | || | | | ||||| | ||||| || || | ||||| || || Sbjct 605612 GGTGGAGTCATCTGATTCCATTGAAAACG--TCAAGAACAAGATTCAAGACAAGGAAGGC 605669 Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 |||||| | || || || || ||||| | || |||||||| || || || | || || Sbjct 605670 ATTCCCCCAGATCAGCAACGTCTCATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACT 605729 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | ||||||||||| |||||||| | || || || ||||| || ||| Sbjct 605730 TTGTCAGACTACAACATTCAAAAGGAGTCTACTCTTCACTTGGTCCTTCGT 605780 >seq4 Length=1091430 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| || ||||| | || |||||| | | Sbjct 753259 ATGCAAATCTTTGTCAAGACACTTACCGGCAAGACTATCACTTTGGAAGTCGAGTCTTCT 753318 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||||| | ||||| || |||| || || || || ||||| | |||| Sbjct 753319 GATTCCATTGAAAACG--TCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACC 753376 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || | || | || |||||||| || || || | || || | || |||| Sbjct 753377 AGCAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCTGATTACA 753436 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || || |||||||| ||| Sbjct 753437 ACATCCAAAAGGAGTCCACTCTTCACTTGGTGCTTCGT 753474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172337340160