Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq73 161 1e-34 seq45 123 3e-23 seq1 113 6e-20 seq2 87.8 2e-12 seq56 84.2 3e-11 >seq73 Length=1220876 Score = 161 bits (178), Expect = 1e-34 Identities = 1096/1740 (63%), Gaps = 53/1740 (3%) Strand=Plus/Plus Query 111621 ATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACA 111680 ||| | ||||| || || | ||||||||||| |||||||| ||||||| | | ||||| Sbjct 414235 ATGATTATGCGTGTTGCTGTTGGTATCCATGGTGAAGATATCGATTCTGCTATTGAGACT 414294 Query 111681 TACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGT 111740 ||| || |||||| || | || | || | | || ||| | ||||| |||||| Sbjct 414295 TACCACTTGATGTCGGAGCGTTTCTTTACACATGGCAGTCCTACCTTGTTCAATGCTGGT 414354 Query 111741 ACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG-CAAACAAGGAGGATTCAATCAA 111799 || ||| | || || |||| || || ||| ||| | | ||||| |||||||| | Sbjct 414355 ACTCCACGTCCACAGCTGTCTTCCTGCTT-CTTGTTGACCATGAAGGATGATTCAATTGA 414413 Query 111800 TGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGG 111859 |||||||| | || || | |||||| | || || ||| || |||||||| || Sbjct 414414 AGGCATTTATGAGACACTAAAGACCTGTGCCAAGATTTCCAAGACAGCAGGTGGTATTGG 414473 Query 111860 GATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATC 111919 | | ||||| | | | || | ||| ||| ||||| ||||| | || Sbjct 414474 TCTTAATATCCACAACATTCGTGCTACTGGATCTTACATTGCTGGTACCAATGGATATTC 414533 Query 111920 AGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGC 111979 | || ||| |||| ||| | || || || ||| ||||| || ||||| | |||| Sbjct 414534 CAACGGCATTGTTCCCATGTTACGTGTGTTCAACAATACAGCTCGTTATGTGGATCAAGG 414593 Query 111980 TGGGCGTCGCAAGGGATCT------ATCGCAGTCTATCTTGAGCCATGGCACGCGGATAT 112033 || || |||| || || | || | ||| | || |||||||| | ||| | Sbjct 414594 TG---GTAACAAGCGACCTGGTGCATTTGCCATGTATTTGGAACCATGGCATCCTGATGT 414650 Query 112034 CATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATC 112092 | || || | || ||||| ||||| || | || ||| | |||| || ||| Sbjct 414651 GTTTGACTTTTTGGATTTGCGCAAGAACCATGGCAAGGAAGAGAATC-GTGCACGTGATT 414709 Query 112093 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 112152 | || | || | ||||||||||| | || ||| | || || || | ||| ||| Sbjct 414710 TGTTTTATGCCTTGTGGATTCCAGACATGTTTATGCGACGTGTGGAAGAAAATGGTGATT 414769 Query 112153 GGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 112212 || |||||| ||||| || | ||||| || | |||| |||||| | |||| Sbjct 414770 GGAGTCTCTTCTGTCCTGATGAAGCACCTGGATTACAAGATGTATGGGGTGATGCATTTG 414829 Query 112213 AAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCG 112272 | | | ||| | || || ||| |||| || | | ||| || Sbjct 414830 ATGAATTATACTTGAGATATGAACGTGAAGGTCGTGCACGTAAGGTGGTCAAGGCACAAA 414889 Query 112273 ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACA 112332 | | ||| | || ||| | | | ||||| || |||||| |||| ||| | |||| Sbjct 414890 AACTTTGGTATGCCATTTTGGAAGCACAAACAGAAACTGGTGGTCCATTCATGTTATACA 414949 Query 112333 AAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACC 112392 | || || || || | || ||||| | || |||||| ||||| | ||| | Sbjct 414950 AGGATGCATGCAATCGCAAATCCAATCAGCAAAACTTGGGTACCATCAAATGCAGCAATC 415009 Query 112393 TCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCAT 112452 | || |||||||| | || | | | ||||| |||||| || || || || Sbjct 415010 TTTGCACAGAAATTGTCGAGTATTCTTCTCCTGATGAAGTGGCTGTATGCAATCTGGCCA 415069 Query 112453 CAATCGCTCTCCCCAAGTATGTGGATCCAGAGACA-AAGA-----------CATTTGATT 112500 || || | || | ||||| | ||||| | || | ||||| | Sbjct 415070 GTATTGCATTGCCTTCTTTTGTGGTGCGCAAGACACATGATACTCCTGCTTCCTTTGACT 415129 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | |||| | || | || || || || || || | |||| | ||||| | Sbjct 415130 TTCAAAAGTTACATAATGTCACCAAGGTGGTAACGTGTAATTTGAACAAGATCATTGACA 415189 Query 112561 GAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 |||| ||| || || ||| ||| || ||| ||| | || ||||| |||| Sbjct 415190 TCAATTATTATCCTGTGCCTGAAGCTGAACG---ATCCAATCGTCGTCATCGTCCTATTG 415246 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 112677 || | ||||| |||||||| || |||| ||||| | || | |||||||||| Sbjct 415247 GTTTAGGTGTTCAAGGTCTTGCTGATGCTTTCATGTTGATGCGTTTCCCATTTGATTCGC 415306 Query 112678 ACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGG 112737 ||||| ||| || | ||| || || ||||| || || ||||| || ||| | || | Sbjct 415307 CTGAAGCCAAGCAACTTAATTTGCAGATCTTTGAAACCATTTATCATGCTGCTGTGGAAG 415366 Query 112738 CGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797 | | || ||||| | ||||||| | ||||| || || | |||||||| || | Sbjct 415367 CATCGACTGAATTGGCTGCACGTGATGGTGCTTATGAGACTTTCCAAGGTTCTCCTGCAT 415426 Query 112798 CACAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAA--GCTTCACTACGACT 112854 | |||||| || |||| ||| |||||| |||| ||| | | || | | || | Sbjct 415427 C-CAAGGGTCAATTGCAATATGACTTGTGGG-GTGTGACACCTACTGATTTA-TGGGA-T 415482 Query 112855 GGGACGCT-CTCAAGG--AACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911 |||| | ||||||| || | | | | || | ||| | || || |||||| | | Sbjct 415483 TGGACTTTGCTCAAGGAAAAAGTAGCCA--AGCATGGTTTACGCAATTCACTTTTGGTAG 415540 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || ||||| || || ||||| |||| ||| | ||| || |||||||||||||| | Sbjct 415541 CTCCTATGCCTACTGCATCCACATCACAGATCCTTGGTTTCAACGAATGCTTTGAACCTT 415600 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA--CAA 113029 |||| | ||| | ||| | | | | || || || || |||||||| || Sbjct 415601 ACACATCCAACTTGTATACACGTCGTGTCTTGGCTGGTGAATTCCAAATTGTCAATCCAT 415660 Query 113030 GCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089 | | | || | || | || |||| ||||| | | ||| | ||| || | || Sbjct 415661 GGTTGT--TGAAGGATTTGGTGGAACGTGGTATCTGGAACGATGATGTCAAGAATATGAT 415718 Query 113090 GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGAT-ATTCCAGATGAAATTAAGAAGT 113148 || || || || |||||| | || || ||||| ||||| | ||||| Sbjct 415719 CATGTCAGACAACGGCTCTATTCAACGT-GTGCCTATCATTCCTGATGATTTGAAGAATC 415777 Query 113149 TGTACCGCACAGTTTGGGAAATCAAGATGAAG-GATGTCATTGACATGGCCGCAGATCGT 113207 | ||| || ||||||||| | | | | | | ||||||| ||||| || |||||| Sbjct 415778 TTTACAAGACTGTTTGGGAACT-ACCACAACGTGTCATCATTGATATGGCTGCTGATCGT 415836 Query 113208 GGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA-TGGAAAGTCCAACGATGTC 113266 ||| ||| |||||||| ||||||||| ||||| | |||| ||| | ||||| || Sbjct 415837 GGTGCCTTTATTGATCAGAGTCAAAGTTTGAATATCTTCATTGGCGAACCCAACTTTG-G 415895 Query 113267 CAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTA 113326 ||||||| | ||||||| | || | ||||| ||||| ||||| || || ||||| || Sbjct 415896 CAAGCTCACAAGTATGCACTTTTATGGATGGAAAAAGGGGCTCAAGACCGGCATGTACTA 415955 >seq45 Length=1879501 Score = 123 bits (136), Expect = 3e-23 Identities = 337/504 (67%), Gaps = 19/504 (4%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG-TTTGATACAAAGTCGC 102168 |||||| || || | |||||||| || ||||| | |||||| ||| || ||| | Sbjct 1418594 AGTTCCTTGCATCAAGAAGAAAGCTGACTGGGCCTTCAAGTGGATTTCATCCAATG---- 1418539 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 ||||||||||||| || || | || ||||| ||| || || |||||||| ||||| | Sbjct 1418538 GTTCCTTTGCTGAACGTCTTGTTGCTTTTGCTGCTGTAGAAGGCATCTTCTTTTCTGGCT 1418479 Query 102229 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT-C 102286 | || ||| | || | |||||||||||| || ||||| |||||||| || ||| | Sbjct 1418478 CTTT-TGCTTCCATCTTTTGGCTCAAGAAACGTGGTCTTATGCCAGG-CTTGACTTTTAG 1418421 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGGAACTTTTC 102344 ||| ||||| || || ||||| || || || ||| || ||||| | | | |||||| Sbjct 1418420 CAATGAGCTCATTTCCCGTGATGAAGGTCTTCACACTGATTTTGCTTGTTTGCTCTTTTC 1418361 Query 102345 AAATTATTGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTT 102404 || ||||| | ||||| | ||| ||||| | ||| || ||||| ||| Sbjct 1418360 TCAT--TTGCGCAAGCAACCATCCCATGAACGTATTCTTGGTATCATTGTTGAAGCTGTT 1418303 Query 102405 GAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCT 102464 | ||||| | | |||| | ||||| ||||| | || || ||||||||| | Sbjct 1418302 GCTATTGAACAAGAATTCTTGACTGATGCTCTTCCCGTGTCCCTGATTGGTATGAATGCC 1418243 Query 102465 GAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTG-TTGAAGCAGATCGGGGT 102523 | |||| |||| ||||| | ||| | ||| | ||| ||| || |||| Sbjct 1418242 AAGCTCATGTGTCAATACATTGAATTTGTTGCCGATCGCTTGCTTGTCGC---CTTGGGT 1418186 Query 102524 GCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGAC 102581 | ||| || || | | |||||||||||||| ||||| | || || | Sbjct 1418185 CTCAACAAGCATTACAATGCTACCAATCCATTTGACTTTATGGACATGATCTCTCTTCAA 1418126 Query 102582 GGGAAGACAAACTTCTTCGAAAAG 102605 || || || ||||| ||||||||| Sbjct 1418125 GGCAAAACCAACTTTTTCGAAAAG 1418102 >seq1 Length=3088551 Score = 113 bits (124), Expect = 6e-20 Identities = 250/367 (68%), Gaps = 6/367 (2%) Strand=Plus/Plus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| | ||||| || || | || |||||||| |||||||||||| | | |||||| | Sbjct 748785 ACATGATTATGCGTGTTGCTCTTGGCATCCATGGTGAAGATATTGATGCAGCTTTGGAAA 748844 Query 111679 CATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTG 111738 |||| || | |||||| | || | ||||| || ||||| || ||||| |||| Sbjct 748845 CATATGAATACATGTCCTGCAAATACTTTACACACGCCACTCCAACTCTTTTCAATGCTG 748904 Query 111739 GTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG-GAGGATTCAATC 111797 ||||||| | |||||| | ||||| |||| ||| | |||| || || ||| || Sbjct 748905 GTACACCTCGTCCCCAATTATCCAGCTGTTATCTT-GTACAAATGAGAGATGATAGCATT 748963 Query 111798 AATGGCATTTACGGCACTCTCACTGA-ATGTGCCCAAATCTCAAAGTGGGCTGGTGGTAT 111856 | |||||||| | || || | ||| ||||| | || || || | ||||||||| | Sbjct 748964 GAAGGCATTTATGATACCCTGA-TGACTTGTGCTCGCATATCCAAATCCGCTGGTGGTGT 749022 Query 111857 CGGGATGCA-CATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTC 111915 || |||| | |||| | | | ||| ||| |||| ||||| |||||| Sbjct 749023 -TGGTTGCAGCTTCCAAAAGATTCGTGCCTCTGGTTCTTATATTGCTGGTACCAATGGTA 749081 Query 111916 AATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACC 111975 ||| |||| ||| |||| ||| | ||||||| || | || || || | ||| | | Sbjct 749082 CATCCAATGGCATTGTTCCCATGTTGCGCGTATACAATGATACTGCTCGTTTTGTCACTC 749141 Query 111976 AAGCTGG 111982 ||| ||| Sbjct 749142 AAGGTGG 749148 >seq2 Length=1153633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || |||||||| || || | ||||| || || || || |||||||| |||||||| Sbjct 770393 TCTTTTGCTGAACGTCTAGTTGCATTCGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCT 770452 Query 102231 TTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 || ||| |||| | ||||||||| ||||| || | ||||||||||| ||| || Sbjct 770453 TT-TGCTTCTATCTTTTGGCTCAAAAAGCGTGGATTGATGCCAGGTCTTACATTCAGTAA 770511 Query 102290 CGAGCTTATCTCTCGTGACGAGGGA 102314 ||||||||| || ||||| || ||| Sbjct 770512 CGAGCTTATTTCACGTGATGAAGGA 770536 >seq56 Length=1351323 Score = 84.2 bits (92), Expect = 3e-11 Identities = 251/377 (67%), Gaps = 19/377 (5%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||||||||| ||||| || || | | || |||||| | |||| ||||| || | Sbjct 692518 ACGATCAAAACGACCAGGACGCATCAAAGCAGGATCAAGAACATCAGGACGATTGGTGCC 692459 Query 15944 GGCGATGACAACAATACCTGTTTCGTT--ATCAAAACCATCCATCTCTGTCAAA-AGCTG 16000 || | ||||| | | |||| || |||||||||||||||||| | ||| | || Sbjct 692458 TGCCAATACAACGACA--TGTTCGCTTTCATCAAAACCATCCATCTC-GACAAGCAATTG 692402 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGT--TGCTTT 16058 || | ||| ||| ||||||||||| | ||| ||| | ||| |||||| Sbjct 692401 ATTCAGAGTGCTTTCACGTTCATCATTGCCACCCATGTGTCCACCTTTGCCACGTGCTTT 692342 Query 16059 CCCACG-GCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGA 16113 ||| |||||||| ||||||| ||| | ||||| || || | || || | Sbjct 692341 ACCAATAGCATCAATTTCATCAACGAAAATAATGCAAGGAGCGTTCTTCTTTGCAGTAG- 692283 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 |||| | ||| |||||||| | || ||||||||||||||||||||||| | | Sbjct 692282 ---CAAACAAATCACGTACACGGGAAGGACCAACACCAACAAACATCTCCACAAATTCAG 692226 Query 16174 CGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | || || | | ||| || ||| || |||||| ||| | || ||| | ||| Sbjct 692225 AACCAGAGACGCT-CAAGAAAGGAACACCAGCTTCACCAGCAGTAGCCTTGGCCAAAAGC 692167 Query 16233 GTCTTACCCGTACCTGG 16249 |||||||| ||||| || Sbjct 692166 GTCTTACCAGTACCAGG 692150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741825813280