Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq12 228 1e-54 seq73 206 3e-48 seq45 120 4e-22 seq2 109 6e-19 seq1 102 1e-16 seq10 91.5 2e-13 seq74 89.7 6e-13 seq22 89.7 6e-13 seq8 89.7 6e-13 >seq12 Length=2893134 Score = 228 bits (252), Expect = 1e-54 Identities = 528/779 (68%), Gaps = 24/779 (3%) Strand=Plus/Plus Query 110374 CCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 |||||||| | |||||| |||||| |||||||||||||| || | |||| |||| | Sbjct 1077922 CCCAAGTTTTGCTGATTGGATTTGCGATTGCATGCATCCTTGTATAACATGAATGGACCA 1077981 Query 110434 CCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAG--TTG 110491 |||||||| || |||| | | || || | ||| | | || |||| || Sbjct 1077982 CCAGTTTCAGTTTGTGCTTCCAAGATAGCATACCAAAGCTTTTGTGCCTTGACAACCTTA 1078041 Query 110492 CGTTAGCGAGACCTTCCTCCTCGTACTTGGTG-TACAAGTCCTCAAATTCCTGTCCGTAC 110550 ||| || | ||||| ||| || |||||| ||||| ||||||||||| | ||| | Sbjct 1078042 CGT--GCACGTCCTTCACGCTCATA-TTGGTGATACAACTCCTCAAATTCTTTTCCCCAA 1078098 Query 110551 ACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCA 110610 || ||| | || || | || || ||||| ||||| ||| |||||| Sbjct 1078099 ACTTCATGCAATCCAGGTGCTTCACTTGGGCAAAAGAGACTCCAATCACCATTTTCCTCA 1078158 Query 110611 ACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCC 110670 || | | |||||||| ||| |||||||||| || | || | ||||| |||| Sbjct 1078159 ACACGTTGCATGAACAAGTCTGGAATCCACAAGGCATAAAACAAATCACGTGCACGATTT 1078218 Query 110671 TCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGT 110730 ||||| | || ||||| ||||| ||||||||||| | || ||| | ||||||||| Sbjct 1078219 TCTTCTTTGCCATGGTTCTTGCGTAAATCCAAAAAGTCAAAGACATCAGGATGCCATGGT 1078278 Query 110731 TCGAGATAGACAGCGA-TGGA-----TCCCTTACGACGACCCGCCTGGTTAACATAGCGT 110784 || ||||||| || | || | || ||| || ||| || | |||||||| Sbjct 1078279 TCAAGATAGATGGCAAATGCACCAGGTCGCTTGTTACCACCT---TGATCCACATAGCGA 1078335 Query 110785 GCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCC 110844 || || ||| | || | ||||| || | ||| |||| ||| | ||||| ||||| Sbjct 1078336 GCAGTATTGTTGTATACACGTAGCATGGGCACAATGCCATTGGAATAGCCATTGGTACCA 1078395 Query 110845 CTAAT-TCTG-GACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCC 110902 ||| | || | | || |||||||||| |||||||| | |||||||||||| ||| Sbjct 1078396 GCAATATATGAGCCAGAT--GCACGAATGTTGTGGATATTAAGACCAATACCACCTGCCG 1078453 Query 110903 ACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCC 110961 ||| ||| || | | | ||| ||||||| |||| || || ||||| || ||| || Sbjct 1078454 TCTTTGAAATCTGGGAGCAAATCT-TGAGTGTCTCATAGATGCCTTCAATGGAGTCTTCC 1078512 Query 110962 TT-GTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020 || | | ||| ||||| || || || | || |||||||| || || |||||||| || Sbjct 1078513 TTCATAGTCAACAAGAAA-CATGATGATAATTGTGGACGAGGTGTGCCGGCATTGAAAAG 1078571 Query 111021 TGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGA 111080 ||| || | ||||| |||| | | ||||||| |||||| || || | || | Sbjct 1078572 TGTTGGACTGGCATGTGTGAAATAGCGCTCGGACATCAAGTTGTAAGTTTCAATGGCAGC 1078631 Query 111081 GGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG-CGTT 111138 | |||| ||| |||||||||| ||||| ||||| ||||| | ||| || |||| Sbjct 1078632 ATCAATGTCTTCACCATGAATACCAACTGCAACACGCATCAACATGTGTTGTGGACGTT 1078690 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 2635001 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGACCCCTGTA 2635060 Query 136777 GGGAACA 136783 | || || Sbjct 2635061 GTGAGCA 2635067 >seq73 Length=1220876 Score = 206 bits (228), Expect = 3e-48 Identities = 543/818 (66%), Gaps = 18/818 (2%) Strand=Plus/Minus Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391 || || | |||||| || || | ||| | || ||| ||||||||| | |||||| Sbjct 415031 TACTCGACAATTTCTGTGCAAAGATTGCTGCATTTGATGGTACCCAAGTTTTGCTGATTG 414972 Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451 |||||| |||||||||||||| || | |||| |||| ||||||||| || |||| Sbjct 414971 GATTTGCGATTGCATGCATCCTTGTATAACATGAATGGACCACCAGTTTCTGTTTGTGCT 414912 Query 110452 TTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTTCCT 110509 | | |||||| | ||| | | || ||| || ||| || ||||||| Sbjct 414911 TCCAAAATGGCATACCAAAGTTTTTGTGCCTTGACCACCTTACGT--GCACGACCTTCAC 414854 Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCG 110569 || || | ||| || || |||||| | | || | ||||| | || | Sbjct 414853 GTTCATATCTCAAGTATAATTCATCAAATGCATCACCCCATACATCTTGTAATCCAGGTG 414794 Query 110570 CCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGT 110629 | | || ||||||||||| ||||| ||| || || || | ||| |||| || Sbjct 414793 CTTCATCAGGACAGAAGAGACTCCAATCACCATTTTCTTCCACACGTCGCATAAACATGT 414734 Query 110630 CAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGA 110689 | |||||||||| || | || | ||||| |||| |||||| | || ||||| Sbjct 414733 CTGGAATCCACAAGGCATAAAACAAATCACGTGCACGATTCTCTTCCTTGCCATGGTTCT 414674 Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA-TG 110748 ||| | ||||||||||| | | ||| | ||||||||||| | ||| | || | || Sbjct 414673 TGCGCAAATCCAAAAAGTCAAACACATCAGGATGCCATGGTTCCAAATACATGGCAAATG 414614 Query 110749 GA-----TCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCC 110803 | || ||| || ||| || | ||||| || ||||| ||||| || | Sbjct 414613 CACCAGGTCGCTTGTTACCACCT---TGATCCACATAACGAGCTGTATTGTTGAACACAC 414557 Query 110804 TGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGG 110863 | ||| |||| ||| || | ||| | ||||| ||||| ||| || | | | Sbjct 414556 GTAACATGGGAACAATGCCGTTGGAATATCCATTGGTACCAGCAATGTAAGATCCAGTAG 414497 Query 110864 CACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-C 110922 ||||||||| |||||||| | |||||||||||| || ||| ||| | ||||| Sbjct 414496 CACGAATGTTGTGGATATTAAGACCAATACCACCTGCTGTCTTGGAAATCTTGGCACAGG 414437 Query 110923 TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGG-CAATTAGAAAGCA 110981 ||| | ||||| ||||||| || ||||| ||||| |||| ||| ||| || ||||| Sbjct 414436 TCT-TTAGTGTCTCATAAATGCCTTCAATTGAATCATCCTTCATGGTCAACAAG-AAGCA 414379 Query 110982 AGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 ||||||| ||| ||||| || || || |||||||| | ||||| | |||| | || Sbjct 414378 GGAAGACAGCTGTGGACGTGGAGTACCAGCATTGAACAAGGTAGGACTGCCATGTGTAAA 414319 Query 111042 CAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAAT 111101 | || | |||||| || ||| || || | || || | ||||| ||| || || Sbjct 414318 GAAACGCTCCGACATCAAGTGGTAAGTCTCAATAGCAGAATCGATATCTTCACCATGGAT 414259 Query 111102 ACCAATGGCAACTCGCATGAACATATATTGAGG-CGTT 111138 ||||| ||||| ||||| | ||||| |||||| |||| Sbjct 414258 ACCAACAGCAACACGCATAATCATATGTTGAGGACGTT 414221 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 913965 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGACCCCTGTA 913906 Query 136777 GGGAACA 136783 | || || Sbjct 913905 GTGAGCA 913899 >seq45 Length=1879501 Score = 120 bits (132), Expect = 4e-22 Identities = 296/438 (68%), Gaps = 12/438 (3%) Strand=Plus/Plus Query 119222 CTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATAAAGTCAAAAGGATT 119281 ||||||||| || || || || || | || ||||| | |||||||||||||| ||||| Sbjct 1418102 CTTTTCGAAAAAGTTGGTTTTGCCTTGAAGAGAGATCATGTCCATAAAGTCAAATGGATT 1418161 Query 119282 TTTGGAGTTCCAGATTGGTGGTTGA---CCAACTTGTTTCAGAAGACGATCGGAGACATA 119338 | | || | || | ||||| |||| | ||| ||||||| ||| | Sbjct 1418162 GGTAGCATTGTAA--TGCTTGTTGAGACCCAAGGCGACAAGCAAG-CGATCGGCAACAAA 1418218 Query 119339 CTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACACGGGA-GAGCAT 119397 || || |||| |||| | | ||||||||| || || |||||||| |||||| Sbjct 1418219 TTCAATGTATTGACACATGAGCTTGGCATTCATACCAATCAGGG-ACACGGGAAGAGCAT 1418277 Query 119398 CGAGGATGAAGTTCTTCT-CGATCTCCACAGCTTCTTTCACGATGGAGTGAATAGTTTCT 119456 | | ||| ||||| | | || | |||||||| | ||| ||||| ||| Sbjct 1418278 CAGTCAAGAA-TTCTTGTTCAATAGCAACAGCTTCAACAATGATACCAAGAATACGTTCA 1418336 Query 119457 GTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCTTGATGAAGCCCT 119516 ||||||| || | ||| | ||| | | ||||| || ||||| ||| Sbjct 1418337 TGGGATGGTTGCTTGCGCAAATGAGAAAAGAGCAAACAAGCAAAATCAGTGTGAAGACCT 1418396 Query 119517 TCATCCCGAGAGATGAGCTCATTACT-GAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTT 119575 ||||| || || ||||||||||| || ||| ||| || ||||| || || | |||||| Sbjct 1418397 TCATCACGGGAAATGAGCTCATTGCTAAAAGTCAAG-CCTGGCATAAGACCACGTTTCTT 1418455 Query 119576 TAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGC 119635 ||||||||||||| | |||| ||||||||||||||||| || ||| || ||||| Sbjct 1418456 GAGCCAAAAGATGGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCTACAGCAGCAAAAGC 1418515 Query 119636 GAATAGACGCTCAGCAAA 119653 | ||||| |||||||| Sbjct 1418516 AACAAGACGTTCAGCAAA 1418533 >seq2 Length=1153633 Score = 109 bits (120), Expect = 6e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| || ||| | |||||||| || || || ||||| |||||||| ||| || Sbjct 770553 GCAAAATCGGTATGTAATCCTTCATCACGTGAAATAAGCTCGTTACTGAATGTAAGACCT 770494 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | ||| | || || ||||||||||| | | |||| ||||||||||||||| Sbjct 770493 GGCATCAATCCACGCTTTTTGAGCCAAAAGATAGAAGCAAAAGAACCAGAAAAGAAGATG 770434 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTC 119658 || ||||| ||||| || | |||||| |||||||||| || Sbjct 770433 CCTTCCACTGCAGCGAATGCAACTAGACGTTCAGCAAAAGATC 770391 >seq1 Length=3088551 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 109405 GAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAA 109464 || || | ||| ||||| || || || |||||| |||||| | || | ||||| || Sbjct 750892 GATCGCAAATAGTACATGCCAGTCTTAAGACCACGCTTCCAAGAATAAAAGTGCATGGAG 750833 Query 109465 GAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATG 109524 ||||||||| | || || ||| ||| | ||||| || ||||| ||||| || Sbjct 750832 GAGAGTTTGCCATAGGTTGGTTCAGCCACAAAGAGATTCATGGATTGAGATTGATCAATA 750773 Query 109525 AATCGACCACGATCAGCCGCCATGTCGATGAT-ACACTTTTGGCTAATTTCCCAGACAGT 109583 ||| | ||||||| || ||||| || || || |||| || | || | |||| ||||| Sbjct 750772 AATGCAGCACGATCTGCAGCCATATCAATAATGACACGTTGAGACAACT-CCCATACAGT 750714 Query 109584 CTTGTACAAATTCTTGATATCATCGGGAAT 109613 |||||| | ||||||| |||||| ||||| Sbjct 750713 CTTGTAAAGCTTCTTGAGATCATCAGGAAT 750684 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 1865862 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGACCCCTGTA 1865921 Query 136777 GGGAACA 136783 | || || Sbjct 1865922 GTGAGCA 1865928 >seq10 Length=558796 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 558764 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGACCCCTGTA 558705 Query 136777 GGGAACAG 136784 | || ||| Sbjct 558704 GTGAGCAG 558697 >seq74 Length=1162362 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 681239 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGACCCCTGTA 681180 Query 136777 GGGAACA 136783 | || || Sbjct 681179 GTGAGCA 681173 >seq22 Length=207277 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 187887 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGACCCCTGTA 187946 Query 136777 GGGAACA 136783 | || || Sbjct 187947 GTGAGCA 187953 >seq8 Length=697591 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 452531 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGACCCCTGTA 452590 Query 136777 GGGAACA 136783 | || || Sbjct 452591 GTGAGCA 452597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975455197200