Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq73 248 1e-60 seq12 183 4e-41 seq1 102 1e-16 seq74 82.4 9e-11 >seq73 Length=1220876 Score = 248 bits (274), Expect = 1e-60 Identities = 1132/1763 (64%), Gaps = 63/1763 (4%) Strand=Plus/Minus Query 105587 GATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAA 105646 |||| | ||||||||| ||||||||||| || | |||||| | || | |||||| Sbjct 415964 GATCTCAAATAGTACATGCCGGTCTTGAGCCCCTTTTTCCATCCATAAAAGTGCATACTT 415905 Query 105647 GAGAGCTTGGACATCGTTGGACTTTCCA-TGAAAAGATTCATACTTTGACTCTGGTCAAT 105705 | ||||||| || ||||| | ||| |||| | ||||| |||||||||||| ||||| Sbjct 415904 GTGAGCTTGC-CAAAGTTGGGTTCGCCAATGAAGATATTCAAACTTTGACTCTGATCAAT 415846 Query 105706 GAAGCGACCACGTTGTGCCGCCATATCAATGACATC-CTTCATCTTGATTTCCCACACTG 105764 ||| |||||| | || ||||||||||||| | | | | | | |||||| || | Sbjct 415845 AAAGGCACCACGATCAGCAGCCATATCAATGATGACACGTTGTGGT-AGTTCCCAAACAG 415787 Query 105765 TGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCC--- 105821 | ||| |||||||| | |||||| || || | | | |||||| || || Sbjct 415786 TCTTGTAAAGATTCTTCAAATCATCAGGAATGATAGGCACACGTTGAATAGAGCCGTTGT 415727 Query 105822 CCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCAT 105881 | | | ||| ||| || ||| | ||| | | ||| | |||| | | | ||| | Sbjct 415726 CTGACATGATCAT---ATTCTTGACATCATCGTTCCAGATACCACGTTCCACCAAATCCT 415670 Query 105882 TGACGAGATGCTTG--TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGAT 105939 | | | | | || |||||||| || || || || | | | | ||| | Sbjct 415669 TCA--ACAACCATGGATTGACAATTTGGAATTCACCAGCCAAGACACGACGTGTATACAA 415612 Query 105940 GTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGT 105999 ||| | ||||| |||||||||||||| || ||| | ||| |||| ||||| || || Sbjct 415611 GTTGGATGTGTAAGGTTCAAAGCATTCGTTGAAACCAAGGATCTGTGATGTGGATGCAGT 415552 Query 106000 TGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT--CCTTG 106057 ||||| || || | |||||| || || | ||| | | | | | | || ||||| Sbjct 415551 AGGCATAGGAGCTACCAAAAGTGAATTGCGTAAACCATGCT--TGGCTACTTTTTCCTTG 415494 Query 106058 AGAACATCCCAGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTG-AAGC 106114 || | | ||| || || | || | ||| |||| |||||| ||| |||| || Sbjct 415493 AGCAAAGTCCAATCCCATAAATCAG-TAGGTGTCACAC-CCCACAAGTCATATTGCAATT 415436 Query 106115 ACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAAT 106174 ||||||| | | |||||||| | || |||||||| | ||| | | |||||||| Sbjct 415435 GACCCTTGG-ATGCAGGAGAACCTTGGAAAGTCTCATAAGCACCATCACGTGCAGCCAAT 415377 Query 106175 TCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCC 106234 ||| || |||| | || ||||| |||||||||||||| | ||| | | | Sbjct 415376 TCAGTCGATGCTTCCACAGCAGCATGATAAATGGTTTCAAAGATCTGCAAATTAAGTTGC 415317 Query 106235 TTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGA 106294 ||||||||| |||||||||| | | || ||| || || |||| || ||||||||| Sbjct 415316 TTGGCTTCAGGCGAATCAAATGGGAAACGCATCAACATGAAAGCATCAGCAAGACCTTGA 415257 Query 106295 ACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGA 106351 ||||| ||||||||||| | || || ||| || ||| ||| ||| || ||| Sbjct 415256 ACACCTAAACCAATAGGACGATGACGACGATTGGA---TCGTTCAGCTTCAGGCACAGGA 415200 Query 106352 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA 106411 ||| |||| ||||||||| ||| | ||| || || | ||| |||| | ||| Sbjct 415199 TAATAATTGATGTCAATGATCTTGTTCAAATTACACGTTACCACCTTGGTGACATTATGT 415140 Query 106412 AGTTTTTCATAATCAAAAGT-GC--GAGTCTCTTCA---TTGA-CAT-ACTTTGGAAGG- 106462 | |||| | | ||||| | || |||| || | ||| || || ||||| Sbjct 415139 AACTTTTGAAAGTCAAAGGAAGCAGGAGTATCATGTGTCTTGCGCACCACAAAAGAAGGC 415080 Query 106463 ---GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 || || |||| |||||| |||||| ||||| | | ||||| | |||| Sbjct 415079 AATGCAATACTGGCCAGATTGCATACAGCCACTTCATCAGGAGAAGAATACTCGACAATT 415020 Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG--- 106576 ||||| || | ||| | || || || ||||| || ||| | | | |||| Sbjct 415019 TCTGTGCAAAGATTGCTGCATTTGATGGTACCCAAGTT---TTGCTGATTGGATTTGCGA 414963 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| ||||||||||| | |||| | || || || || || |||| | | ||| Sbjct 414962 TTGCATGCATCCTTGTATAACATGAATGGACCACCAGTTTCTGTTTGTGCTTCCAAAATG 414903 Query 106637 GCCTTCCACACATCG-GCGGCTGGTACAA-TGGCGTTGGCCCGTCCCTCCGCCTCGTACT 106694 || | ||| | | | | || | || | ||| || || || || || || Sbjct 414902 GCATACCAAAGTTTTTGTGCCTTGACCACCTTACGT--GCACGACCTTCACGTTCATATC 414845 Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 106754 | ||| | | ||||| | |||||| | || | || ||||| | || | Sbjct 414844 TCAAGTATAATTCATCAAATGCATCACCCCATACATCTTGTAATCCAGGTGCTTCATCAG 414785 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 ||||||| ||| ||| | |||| || || || || ||| || | ||||||||||| Sbjct 414784 GACAGAAGAGACTCCAATCACCATTTTCTTCCACACGTCGCATAAACATGTCTGGAATCC 414725 Query 106815 ACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 ||| || |||| | ||| | | || ||| |||||| | || ||||| || || Sbjct 414724 ACAAGGCATAAAACAAATCACGTGCA-CGATTCTCTTCCTTGCCATGGTTCTTGCGCAAA 414666 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATA------GACTGCGATAGAT 106927 || | || || | | ||| | |||||||| || | ||| | ||| || | Sbjct 414665 TCCAAAAAGTCAAACACATCAGGATGCCATGGTTCCAAATACATGGCAAATGCACCAGGT 414606 Query 106928 CCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 | ||| | ||| |||||| ||||| || ||||| ||| || || || | ||| Sbjct 414605 CGCTTGTTA---CCACCTTGATCCACATAACGAGCTGTATTGTTGAACACACGTAACATG 414549 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 107047 |||| ||| || | || | ||||| || || ||| |||| | | || | | Sbjct 414548 GGAACAATGCCGTTGGAATATCCATTGGTACCAGCAATGTAAGATCCAGTAGCACGAATG 414489 Query 107048 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 107107 | ||||| | | |||||||| || || ||| || || | ||||| | | || Sbjct 414488 TTGTGGATATTAAGACCAATACCACCTGCTGTCTTGGAAATCTTGGCACAGGTCTTTAGT 414429 Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 107167 || |||| || || | ||||| || ||||| ||| | | |||||| |||| | Sbjct 414428 GTCTCATAAATGCCTTCAATTGAATCATCCTTCATGGTCAACAAGAAGCAGGAAGACAGC 414369 Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || | ||| |||||||||||||| | ||| || | | || | || | || | Sbjct 414368 TGTGGACGTGGAGTACCAGCATTGAACAAGGTAGGACTGCCATGTGTAAAGAAACGCTCC 414309 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| || ||| ||||| | ||||||| || ||||| || ||||| || | || Sbjct 414308 GACATCAAGTGGTAAGTCTCAATAGCAGAATCGATATCTTCACCATGGATACCAACAGCA 414249 Query 107288 ACACGCATAAACATGTATTGGGG 107310 |||||||||| ||| | ||| || Sbjct 414248 ACACGCATAATCATATGTTGAGG 414226 >seq12 Length=2893134 Score = 183 bits (202), Expect = 4e-41 Identities = 548/828 (66%), Gaps = 42/828 (5%) Strand=Plus/Plus Query 105595 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTT 105654 ||||||||| || ||||| || |||| ||||| | || | ||||| || | ||| Sbjct 1076911 ATAGTACATGCCAGTCTTAAGACCTTTCTTCCAGCCATAAAAGTGCATGCTAGTCAACTT 1076970 Query 105655 GGACATCGTTGGACTTTCCA-TGAAAAGATTCATACTTTGACTCTGGTCAATG-AAGCGA 105712 | || ||| | | ||| |||||| |||| ||||||||||| ||||| ||||| Sbjct 1076971 GC-CAAAGTTTGGTTCACCAATGAAAATGTTCAAGCTTTGACTCTGATCAATATAAGCG- 1077028 Query 105713 CCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATT--TCCCACACTGTGCGGT 105770 ||||| | || ||||||||||||| | | | | || ||||| || || || Sbjct 1077029 CCACGATCGGCTGCCATATCAATGA--TGGTACGTTGAGAAAGCTCCCATACAGTCTTGT 1077086 Query 105771 AGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCC---CCGCCT 105827 |||||||||||| || | |||||||| | ||| ||||| || || | | | Sbjct 1077087 AGAGATTCTTGAGCTCCTGTGGGATATTGGGTATACGCTGAATCGAGCCATTATCTGACA 1077146 Query 105828 TGACCATGAGATCCTTCA---TATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGA 105884 ||| ||| || ||| | |||| || ||| ||||| || | | ||||| || | Sbjct 1077147 TGATCAT---ATTCTTGACATTATCATT---CCATAGACCCATTTCCACAAGATCCTTCA 1077200 Query 105885 CGAGATGCTTG--TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTT 105942 || | || |||||||| || || || || | | || ||| | || Sbjct 1077201 AAAGC--CATGGATTGACAATTTGGAATTCACCAGCAATCACACGTCGAGTATACAAATT 1077258 Query 105943 CGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 106002 | ||||| |||||||||||||| || || | |||||||| || || ||||| || Sbjct 1077259 GGATGTGTAAGGTTCAAAGCATTCGTTGAAGCCAAGGATTTGTGAAGTAGATGCTGTAGG 1077318 Query 106003 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG--ATGCGTTCCTTGAGA 106060 ||| || |||| ||| || ||||||||||| || | ||| || || ||| | Sbjct 1077319 CATAGGCGCCACCAAGAGTGAATTACGAAGACCATTCT--TTGCAATCTTTTGCTTCAAT 1077376 Query 106061 ACATCCCAGTCGTAG----TTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC 106116 || |||| || | |||| ||| | || | |||| | |||| ||||||| Sbjct 1077377 TCAGCCCAATCCCAAAGATTTGA---TGGCGTAAC-TCCCCATAGATCATATTGAAGTTG 1077432 Query 106117 CCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC 106176 |||| ||| | || || || ||| |||||||||| | ||| | | |||| | ||| Sbjct 1077433 TCCTTTGGAAGCAGGTGATCCATCATATGTCTCATAAGTACCATCCACAGCAGCAAGTTC 1077492 Query 106177 ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTT 106236 || ||||||| | || ||||| || ||||||||||| | | ||| | || ||| Sbjct 1077493 GCAAGATGCCTCCAATGCAGCATGATAGATTGTTTCAAAGATTTGCGTATTGAGCTTCTT 1077552 Query 106237 GGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAAC 106296 |||||| |||||| || | || || ||| ||||| ||||||| |||||||| || Sbjct 1077553 GGCTTCTGGTGAATCGAAAGGATAACGCATCAACATAAAAGCATCCGCCAGACCTTGTAC 1077612 Query 106297 ACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG---GGATA 106353 ||| | |||||| || | || || ||| || ||| ||| || ||| ||||| Sbjct 1077613 ACCAAGACCAATGGGACGATGACGGCGATTTGA---ACGCTCAGCTTCCACGACAGGATA 1077669 Query 106354 AAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 106401 | | || | ||||||| ||| ||||| |||||||||| ||| || Sbjct 1077670 ATAGTTGATATCAATGATCTTGTTGAGATTCTTGGTAACAACCTTGGT 1077717 Score = 147 bits (162), Expect = 3e-30 Identities = 373/561 (66%), Gaps = 15/561 (3%) Strand=Plus/Plus Query 106760 AAAAGAGAC--CATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817 ||||||||| || | |||| |||||||| || | |||||| | |||||||||||||| Sbjct 1078130 AAAAGAGACTCCAATCACCATTTTCCTCAACACGTTGCATGAACAAGTCTGGAATCCACA 1078189 Query 106818 GGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 106876 || |||| | ||| | | ||| || ||||| | || ||||| ||||| || Sbjct 1078190 AGGCATAAAACAAATCACGTGCAC-GATTTTCTTCTTTGCCATGGTTCTTGCGTAAATCC 1078248 Query 106877 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGAT------AGATCCC 106930 | || || | || ||| | |||||||| |||||||||| || | || || | Sbjct 1078249 AAAAAGTCAAAGACATCAGGATGCCATGGTTCAAGATAGATGGCAAATGCACCAGGTCGC 1078308 Query 106931 TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990 || || || |||||| |||||||| || || ||| |||| || ||||| || Sbjct 1078309 TTGTTAC---CACCTTGATCCACATAGCGAGCAGTATTGTTGTATACACGTAGCATGGGC 1078365 Query 106991 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 107050 | ||| |||| || | ||||| || || |||| || | || | | | Sbjct 1078366 ACAATGCCATTGGAATAGCCATTGGTACCAGCAATATATGAGCCAGATGCACGAATGTTG 1078425 Query 107051 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 107110 ||||| | | |||||||| || ||| |||||| || || | || | | || || Sbjct 1078426 TGGATATTAAGACCAATACCACCTGCCGTCTTTGAAATCTGGGAGCAAATCTTGAGTGTC 1078485 Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170 ||||||| || | || ||||| ||||| | | | | ||| || || | || Sbjct 1078486 TCATAGATGCCTTCAATGGAGTCTTCCTTCATAGTCAACAAGAAACATGATGATAATTGT 1078545 Query 107171 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGA 107229 || | ||||| || |||||||| || ||||| | || || |||| ||| | | ||| Sbjct 1078546 GGACGAGGTGTGCCGGCATTGAAAAGTGTTGGACTGGCATGTGTGAA-ATAGCGCTCGGA 1078604 Query 107230 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCAC 107289 |||| || ||| || || | | ||| |||||||||||| || || || || | || || Sbjct 1078605 CATCAAGTTGTAAGTTTCAATGGCAGCATCAATGTCTTCACCATGAATACCAACTGCAAC 1078664 Query 107290 ACGCATAAACATGTATTGGGG 107310 |||||| ||||||| ||| || Sbjct 1078665 ACGCATCAACATGTGTTGTGG 1078685 >seq1 Length=3088551 Score = 102 bits (112), Expect = 1e-16 Identities = 252/375 (67%), Gaps = 8/375 (2%) Strand=Plus/Minus Query 106940 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 106999 ||| ||||| | ||| | || || || | || ||||||| | ||| |||| ||| ||| Sbjct 749148 CCACCTTGAGTGACAAAACGAGCAGTATCATTGTATACGCGCAACATGGGAACAATGCCA 749089 Query 107000 TCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATG-TG 107058 | ||| |||||| || || |||| ||| | ||| | | | |||| | || Sbjct 749088 TTGGATGTACCATTGGTACCAGCAATATAAGAACCAGAGGCACGAATCTTTTGGAAGCTG 749029 Query 107059 CATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGAT 107118 || || || ||| ||||| | || || || | ||||| | | || || |||| || Sbjct 749028 CAACC-AACACCACCAGCGGATTTGGATATGCGAGCACAAGTCATCAGGGTATCATAAAT 748970 Query 107119 ACCGTTGATTGAGTCCTC-CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 107177 || | || || || || || | | ||| | || ||||| | || || | | Sbjct 748969 GCCTTCAATGCTATCATCTCTCATTTGT-ACAAGATAACAGCTGGATAATTGGGGACGAG 748911 Query 107178 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTT 107235 |||||||||||||||| || ||||| || ||||| || | | ||| |||||| | Sbjct 748910 GTGTACCAGCATTGAAAAGAGTTGGAGTGGCGTG--TGTAAAGTATTTGCAGGACATGTA 748853 Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 || ||||| ||||| | | |||||| ||||| || |||||||| | || |||||||| Sbjct 748852 TTCATATGTTTCCAAAGCTGCATCAATATCTTCACCATGGATGCCAAGAGCAACACGCAT 748793 Query 107296 AAACATGTATTGGGG 107310 || ||||| ||| || Sbjct 748792 AATCATGTGTTGAGG 748778 >seq74 Length=1162362 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 7176 GGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGG 7235 |||||||| | || || | ||||||||||| || |||||||| |||| ||||||| Sbjct 830642 GGTAACATTGATGCCAAGCGTGATTGGGGTCATGCTCGTGACTATGTCGAAGGCATGTGG 830701 Query 7236 CTCATGCTTCAACAAGAGGAAGCC-GACGAATATGTAGTAGCAACGGGTGAGACCCA 7291 ||||||||||||||||| ||||| || || | ||| | || || ||||| || || Sbjct 830702 CTCATGCTTCAACAAGA-CAAGCCTGAAGACTTTGTTTTGGCCACTGGTGAAACTCA 830757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980254267760