Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq9 156 9e-33 seq4 156 9e-33 seq1 156 9e-33 seq34 145 2e-29 seq12 127 5e-24 >seq9 Length=614693 Score = 156 bits (172), Expect = 9e-33 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| ||||||||||||||||||| ||| || | |||||||| || || || || Sbjct 95417 AGTCGACTCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCTTCAAGTTGTTTGCC 95358 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || || ||||| ||||| |||||||| ||||| ||||| || || |||||||| Sbjct 95357 AGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTT 95298 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||| ||||| | || || ||| ||||| | || | |||||||| || | ||| Sbjct 95297 GACGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTCTTTCCAGTGAGAGT 95238 Query 195123 TTTTACGAACACTTGCATT 195141 || || || | ||||||| Sbjct 95237 CTTGACAAAGATTTGCATT 95219 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| |||||||| || |||||||| | |||||| | || ||||| ||||| || || Sbjct 95644 GTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCGTCTTCAAGCTGTTTGCCA 95585 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | ||||| || || |||||||| ||||| ||||||||||| || | |||| Sbjct 95584 GCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTGTTCTTG 95525 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || |||||||| | || || |||||||||||| || | ||||| || || | ||| Sbjct 95524 ACATTCTCAATAGAATCGGACGATTCCACTTCAAGTGTGATAGTCTTGCCAGTAAGAGTC 95465 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 95464 TTGACAAAGATTTGCAT 95448 >seq4 Length=1091430 Score = 156 bits (172), Expect = 9e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || ||||||||||||||||| ||||| || ||||| || | |||||| | Sbjct 754161 GAGACGCAACACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACG 754102 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || ||||| || || ||||| || ||||| || || ||||| Sbjct 754101 ACCATCTTCAAGTTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATACCTTC 754042 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || ||||| || || | |||||| || ||||| | || ||| ||| ||||| | || Sbjct 754041 CTTATCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGATTCAACTTCCAAAGT 753982 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || |||||||| || || || | |||||| Sbjct 753981 GATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753943 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||||||||| ||||| || |||||||| | | ||| | |||||||| || || Sbjct 753462 GTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCTTCAAGTTG 753403 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||||| ||||| | ||||| |||||||||||||||||||| || ||||| || || Sbjct 753402 TTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTT 753343 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||||||||| ||||||| || ||| || ||||| | || | ||||| || || Sbjct 753342 GTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTCTTGCCGGT 753283 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| Sbjct 753282 AAGTGTCTTGACAAAGATTTGCAT 753259 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || ||||| || ||||| || | | ||| | |||||||| || || Sbjct 753918 GTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCAAGTTG 753859 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||||| ||||| | ||||| |||||||||||||| ||||| |||||||| || || Sbjct 753858 TTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTT 753799 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| || ||||| | || ||| || ||||| | |||| ||||| || || Sbjct 753798 GTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTCTTGCCAGT 753739 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || || || | |||||| Sbjct 753738 CAAAGTCTTGACAAAGATTTGCAT 753715 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || ||||| || |||||||| | | ||| | |||||||| || || Sbjct 753690 GTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTCAAGTTG 753631 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || ||||| |||||||||||||| ||||| || ||||| || || Sbjct 753630 CTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTATCTTGGATCTT 753571 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| ||||| ||||| | || || ||| ||||| | || | ||||| || || Sbjct 753570 ATTCTTAACGTTTTCAATAGAATCAGAGGATTCAACTTCCAAAGTGATGGTCTTGCCAGT 753511 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || || || | |||||| Sbjct 753510 CAAAGTCTTGACAAAGATTTGCAT 753487 >seq1 Length=3088551 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| |||||||| |||||||| | | ||| | ||||||||||| || Sbjct 606224 GTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCATCTTCGAGTTG 606165 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||| ||||| | ||||| |||||||||||||||||||| || ||||| || || Sbjct 606164 CTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTT 606105 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| |||||||| | || || || ||||| | || | ||||| || || Sbjct 606104 GTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGT 606045 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || || || | ||||| Sbjct 606044 CAAAGTCTTGACAAAGATCTGCAT 606021 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| |||||||| ||||| || | | ||| | |||||||| || || Sbjct 605768 GTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCATCTTCAAGTTG 605709 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||| || Sbjct 605708 TTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATCTT 605649 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||||||||| ||||||| || || ||||| || | ||| | ||||| || || Sbjct 605648 GTTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTCTTGCCAGT 605589 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 605588 AAGGGTCTTGACGAAGATTTGCAT 605565 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||||||||| || ||||| |||||||| || | | ||| | ||||| || Sbjct 606457 ACAAGGTGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCCTCA 606398 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || ||||| ||||| | ||||| |||||||||||||||||||| || ||||| Sbjct 606397 AGTTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGG 606338 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || | |||||| |||||||| | || || || ||||| | || | ||||| Sbjct 606337 ATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTG 606278 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || || || | ||||| Sbjct 606277 CCAGTCAAAGTCTTGACAAAGATCTGCAT 606249 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || ||||| |||||||| || | | ||| | |||||||| || || Sbjct 605996 GTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCTTCAAGTTG 605937 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||||| ||||| || || || |||||||||||||||||||| || || || || || Sbjct 605936 TTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGGATCTT 605877 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||||||||| ||||| | || || || ||||| | || | ||||| || || Sbjct 605876 GTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGT 605817 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || || || | ||||| Sbjct 605816 CAAAGTCTTGACAAAGATCTGCAT 605793 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| ||||| || ||||| || | ||||| | ||||||||||| || Sbjct 483730 GTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCGAGTTG 483671 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||| || ||||| || | ||||| ||||| ||||| || ||| Sbjct 483670 CTTGCCAGCGAAAATCAAACGTTGCTGGTCAGGAGGGATACCT 483628 >seq34 Length=2204315 Score = 145 bits (160), Expect = 2e-29 Identities = 124/153 (81%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||||||||| ||||| || ||||| || | | ||| | |||||||| || || Sbjct 1854144 GTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGACCATCTTCAAGTTG 1854085 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || | ||||| |||||||||||||||||||| || |||||||| || Sbjct 1854084 CTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGAATCTT 1854025 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTC 195089 ||||||||| |||||||| | ||| || || || Sbjct 1854024 TTGCTTGACATTCTCAATCGAGTCAGAGCTGTC 1853992 >seq12 Length=2893134 Score = 127 bits (140), Expect = 5e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| ||||| |||||||| || | | ||| | ||||| ||||| || Sbjct 1461590 GTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGACCATCCTCGAGTTG 1461531 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || | ||||| |||||||||||||| || || || ||||| || || Sbjct 1461530 CTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGGATCTT 1461471 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTC 195089 ||||||||| || ||||| | ||| || || || Sbjct 1461470 TTGCTTGACATTTTCAATCGAGTCAGAGCTGTC 1461438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480548072758