Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9 102 5e-17 seq4 100 2e-16 seq1 95.1 8e-15 >seq9 Length=614693 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||| || || || ||||| | || |||| || || ||||| || || || Sbjct 95410 TCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAA 95351 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | || |||||||| ||||| || |||||| | Sbjct 95350 ATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTT 95291 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || ||| | || || || | || ||||| ||||| ||||||||||| ||| Sbjct 95290 TCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGACA 95231 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 95230 AAGATTTGCAT 95220 >seq4 Length=1091430 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| || || ||||| ||||| || | | || |||| || Sbjct 753923 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCA 753864 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| || ||||| || | |||||||||||| | || | || |||||||| Sbjct 753863 AGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGG 753804 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| | ||||| | | || || ||| | |||||| || | || ||||| || Sbjct 753803 ATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTCTTG 753744 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | |||||| |||||||| |||||| Sbjct 753743 CCAGTCAAAGTCTTGACAAAGATTTGCATA 753714 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || || || ||||| || || || | | || |||| || Sbjct 753467 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCTTCA 753408 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| || ||||| || | |||||||||||| | || | || ||||| || Sbjct 753407 AGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGG 753348 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| | |||||| | | || || ||| | ||| || || | || || || || Sbjct 753347 ATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTCTTG 753288 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| |||||||| ||||| Sbjct 753287 CCGGTAAGTGTCTTGACAAAGATTTGCAT 753259 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| || || ||||| || || || | | || |||| || Sbjct 753695 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTCA 753636 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||| || || |||||||||||| | || | || ||||| || Sbjct 753635 AGTTGCTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTATCTTGG 753576 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| | || ||| | | || || ||| || ||||| || | || ||||| || Sbjct 753575 ATCTTATTCTTAACGTTTTCAATAGAATCAGAGGATTCAACTTCCAAAGTGATGGTCTTG 753516 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | |||||| |||||||| |||||| Sbjct 753515 CCAGTCAAAGTCTTGACAAAGATTTGCATA 753486 >seq1 Length=3088551 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| || || || || ||||| || | | || |||| || Sbjct 606001 ACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCTTCA 605942 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| || ||||| || || || ||||||||| | || | || ||||| || Sbjct 605941 AGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGG 605882 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| | |||||| | | || || ||| | |||||| || | || || || || Sbjct 605881 ATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTG 605822 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | |||||| ||||||||||||||| Sbjct 605821 CCAGTCAAAGTCTTGACAAAGATCTGCATA 605792 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || || |||||||| || || || | | || |||| || Sbjct 606229 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCATCTTCG 606170 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| ||||| || | |||||||||||| | || | || ||||| || Sbjct 606169 AGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGG 606110 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| | ||||| || || || || ||| | |||||| || | || || || | Sbjct 606109 ATCTTGTTCTTGAC--ATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCT 606052 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || | |||||| ||||||||||||||| Sbjct 606051 TGCCAGTCAAAGTCTTGACAAAGATCTGCATA 606020 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| || || || || ||||| || | | || |||| || || || Sbjct 606452 GTGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCCTCAAGTTG 606393 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||| || ||||| || | |||||||||||| | || | || ||||| || ||||| Sbjct 606392 TTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTT 606333 Query 34898 CTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCC 34955 | ||||| || || || || ||| | |||||| || | || || || || || Sbjct 606332 GTTCTTGAC--ATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCA 606275 Query 34956 GTGAGAGTCTTCACAAAGATCTGCATA 34982 || | |||||| ||||||||||||||| Sbjct 606274 GTCAAAGTCTTGACAAAGATCTGCATA 606248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633307221072