Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 129 7e-25 seq45 123 3e-23 >seq2 Length=1153633 Score = 129 bits (142), Expect = 7e-25 Identities = 298/444 (67%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 |||||| ||| ||||| | || || || || ||||| || | || || || | || Sbjct 770845 TTGATAATCTGACACTCGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGAGAAATCATGTC 770786 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATT-CCTTCAGAA 37005 |||||| ||||| ||||| | || || ||| || | | | | || || || || Sbjct 770785 CATAAAGTCAAAGGGATTGGTTGAATGATA-ATGCTTGTCTACGCCAAGAGCCACCAAAA 770727 Query 37006 GCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTT 37065 | | |||||| |||||||| ||||| | |||||| || | || |||||||| | Sbjct 770726 GACGATCCGCCACAAATTCAATGTACTGACACATGAGCTTGGCATTCATACCAATCAAAG 770667 Query 37066 TTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATA 37124 || || | |||||| | ||||| | || || || | ||||| || ||| ||| Sbjct 770666 AAACAGGTAAAGCATCTGTTAAGAATTC-TTGCTCGATATTAACAGCTTCAATAATGATA 770608 Query 37125 TTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAA 37184 | | ||| || | || ||| ||| | || |||||| | |||||||||| Sbjct 770607 TCACGGATACGTTGATGAGATGGCTGATGACGAAGATGAGAAAACAAGAGACATGCAAAA 770548 Query 37185 TCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATT 37244 || |||||| |||||||| | || | || ||| || || | |||||||| Sbjct 770547 TCGGTATGTAATCCTTCATCACGTGAAATAAGCTCGTTACTGAATGTAAGACCTGGCATC 770488 Query 37245 AAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCA 37304 || || | ||||| | |||||| || | |||||||| ||||||||||| || ||||| Sbjct 770487 AATCCACGCTTTTTGAGCCAAAAGATAGAAGCAAAAGAACCAGAAAAGAAGATGCCTTCC 770428 Query 37305 ACTGCTGCAAATGCTACAAGACGT 37328 ||||| || ||||| || |||||| Sbjct 770427 ACTGCAGCGAATGCAACTAGACGT 770404 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 37401 GTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATT 37460 |||||||| || | ||||| | | |||||||| | ||| | |||||||| ||||| Sbjct 770272 GTTTCAATAGCATCAAAGAGCATTTCTTTTTCTTGAGGATCCTTGATATAAGTGTCAATC 770213 Query 37461 AGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACAC 37520 | | ||| || | ||||||||||| |||||||| ||||| || ||||| || ||| Sbjct 770212 AAAAGACTGTAAGTCTCAGAGTGAATGTTTTCAATCATGATCTGGAATCCATAGAAGCAC 770153 Query 37521 CTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATC 37580 | ||||||| | ||| || ||||| | || | || | | || ||||| || || Sbjct 770152 TTGGCTTCAGCAATTTGGACTTCGTTGCAGAAACGCTCTACAAGATTCTCATTGACGATA 770093 Query 37581 CCATCACTAGCTG-CAAAGAAAGCAAGAACA 37610 ||||| | | ||| ||||||||||||| ||| Sbjct 770092 CCATC-CGAACTGGCAAAGAAAGCAAGCACA 770063 >seq45 Length=1879501 Score = 123 bits (136), Expect = 3e-23 Identities = 286/425 (67%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 36907 TTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAG 36966 |||||||||| || || || |||| || || || | |||||||| ||||||||||| | Sbjct 1418104 TTTCGAAAAAGTTGGTTTTGCCTTGAAGAGAGATCATGTCCATAAAGTCAAATGGATTGG 1418163 Query 36967 ATGTATTATATATAGTACTACATGAT--AATTCCTTCAGAAGCCTATCCGCAACAAATTC 37024 | ||| || || | | | || || | || | | ||| ||||||||||| Sbjct 1418164 TAGCATTGTA-ATGCTTGTTGA-GACCCAAGGCGACAAGCAAGCGATCGGCAACAAATTC 1418221 Query 37025 TATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-T 37083 ||||||| |||||| || | || |||||||| || || |||| ||||| | Sbjct 1418222 AATGTATTGACACATGAGCTTGGCATTCATACCAATCAGGGACACGGGAAGAGCATCAGT 1418281 Query 37084 GAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAG 37143 ||||| | || ||| || ||||| || || ||| || |||| ||| | | Sbjct 1418282 CAAGAATTC-TTGTTCAATAGCAACAGCTTCAACAATGATACCAAGAATACGTTCATGGG 1418340 Query 37144 TTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCAT 37203 ||| | | |||| ||| | ||||| ||||||||| || | |||||||| Sbjct 1418341 ATGGTTGCTTGCGCAAATGAGAAAAGAGCAAACAAGCAAAATCAGTGTGAAGACCTTCAT 1418400 Query 37204 CTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCC 37263 | | || | ||||| ||| || || |||||||| | ||| | ||| || | || Sbjct 1418401 CACGGGAAATGAGCTCATTGCTAAAAGTCAAGCCTGGCATAAGACCACGTTTCTTGAGCC 1418460 Query 37264 AAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAA 37323 |||| || | |||||||| ||||||||||| || ||||| || || ||||| || |||| Sbjct 1418461 AAAAGATGGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCTACAGCAGCAAAAGCAACAA 1418520 Query 37324 GACGT 37328 ||||| Sbjct 1418521 GACGT 1418525 Score = 105 bits (116), Expect = 8e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 37390 CACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATAT 37449 |||| | | | |||||||| || | ||||| | | ||||||| | ||| | |||| Sbjct 1418663 CACACTTACTAGTTTCAATCGCGTCAAAGAGCATTTCCTTTTCTTGAGAATCCTTGATAT 1418722 Query 37450 AAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAAC 37509 |||| ||||| | | |||||| | |||||||| || |||||||| || || || | Sbjct 1418723 AAGTGTCAATCAAAAGACTATAAGTCTCAGAGTGGATGTTTTCAATCATGATTTGGAATC 1418782 Query 37510 CATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTT 37569 |||| |||||| | ||||||| | ||| || ||||| | || | || | | || | Sbjct 1418783 CATAGAAACACTTGGCTTCAGCAATTTGGACTTCGTTGCAGAAACGCTCCACAAGATTCT 1418842 Query 37570 CATTAACTATCCCATCACTAGCTG-CAAAGAAAGCAAGAACA 37610 |||| || || ||||| | | ||| ||||||||||||| ||| Sbjct 1418843 CATTGACGATACCATC-CGAACTGGCAAAGAAAGCAAGCACA 1418883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316252106960