Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1 138 9e-28 seq9 132 4e-26 seq4 125 6e-24 seq34 98.7 8e-16 >seq1 Length=3088551 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| ||||| || ||||| || |||||||| | | ||| | |||| || Sbjct 606229 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCATCTTCG 606170 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| |||||||| ||||| || || || || || ||||||||||| |||||||| Sbjct 606169 AGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGG 606110 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || | || ||| | || | || ||||| | || ||||| | ||||| || ||| Sbjct 606109 ATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTG 606050 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || ||||| |||||||| Sbjct 606049 CCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| |||||||| ||||| |||||||| || | | ||| | |||| || Sbjct 606001 ACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCTTCA 605942 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || |||||||| || | |||||| || || || ||||||||||| ||||| || Sbjct 605941 AGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGG 605882 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || | || || |||| | || ||||| | || ||||| | ||||| || ||| Sbjct 605881 ATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTG 605822 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || ||||| |||||||| Sbjct 605821 CCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| ||||| |||||||| || | | ||| | |||| || | ||| Sbjct 606451 TGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCCTCAAGTTGT 606392 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| ||||| || || || || || ||||||||||| |||||||| || || Sbjct 606391 TTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTG 606332 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 | || ||| | || | || ||||| | || ||||| | ||||| || ||||| || Sbjct 606331 TTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTC 606272 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 ||||| || ||||| |||||||| Sbjct 606271 AAAGTCTTGACAAAGATCTGCAT 606249 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| ||||| || ||||| || ||||| || | | ||| | |||| || Sbjct 605773 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCATCTTCA 605714 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || |||||||| || | ||| || ||||| || ||||||||||| || |||||| Sbjct 605713 AGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGA 605654 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || | || || |||| | | ||||| | ||||| || | |||| || ||| Sbjct 605653 ATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTCTTG 605594 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || || || || |||||| Sbjct 605593 CCAGTAAGGGTCTTGACGAAGATTTGCATG 605564 >seq9 Length=614693 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 || ||||| || || || | || ||||||||||| || |||||||| | | ||| | | Sbjct 95665 AAGCGTAATACCAAGTGCAACGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGG 95606 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || || | || || || || || |||||||| || ||||| || ||||| ||||| Sbjct 95605 CCGTCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCC 95546 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || |||||||| || | || ||| | || | || || |||| |||||||||||| ||| Sbjct 95545 TTGTCTTGAATCTTGTTCTTGACATTCTCAATAGAATCGGACGATTCCACTTCAAGTGTG 95486 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||| || | ||| || ||||| || ||||| Sbjct 95485 ATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 95448 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | ||| || | || ||||| | || || || ||||| ||||||||||||| Sbjct 95446 CCACCACGTAAGCGAAGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAA 95387 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||| || || || || || | ||| || || || || ||| Sbjct 95386 AGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGA 95327 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || ||||| || || |||| | || ||||| | ||| ||| Sbjct 95326 ATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACT 95267 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || | |||| || || || || | ||| || ||||| || ||||| || Sbjct 95266 TCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCATTGT 95217 >seq4 Length=1091430 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || || ||||| || |||||||| | | ||| | |||| || Sbjct 753467 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCTTCA 753408 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || |||||||| |||||||| || || || || ||||||||||| |||||||| Sbjct 753407 AGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGG 753348 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || | || || |||| | | ||||| | || ||||| | ||||| || ||| Sbjct 753347 ATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTCTTG 753288 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||||| | || || ||||| || |||||||| Sbjct 753287 CCGGTAAGTGTCTTGACAAAGATTTGCATGGT 753256 >seq34 Length=2204315 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || || ||||| || ||||| || | | ||| | |||| || Sbjct 1854149 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGACCATCTTCA 1854090 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || || || |||||||| || || || || ||||||||||| ||||||||| Sbjct 1854089 AGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGA 1854030 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGA 101412 || ||||| || ||| | || | | |||||| Sbjct 1854029 ATCTTTTGCTTGACATTCTCAATCGAGTCAGA 1853998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278042606418