Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 2e-14 seq12 91.5 3e-13 >seq2 Length=1153633 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || ||||| || | || || ||||| || || || ||| |||| ||| ||| Sbjct 770556 CATGCAAAATCGGTATGTAATCCTTCATCACGTGAAATAAGCTCGTTACTGAATGTAAGA 770497 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || ||||||||| || || | || ||||| ||||| |||||| Sbjct 770496 CCTGGCATCAATCCACGCTTTTTGAGCCAAAAGATAGAAGCAAAAGAACCAGAAAAGAAG 770437 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 ||||| |||||||| ||||| || || | || | ||||| | ||| ||| Sbjct 770436 ATGCCTTCCACTGCAGCGAATGCAACTAGACGTTCAGCAAAAGATCC---ATTGGAAGAG 770380 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| || ||||| ||||||||||||||||| || || Sbjct 770379 ATCCATCGAAATGCCCATTCTGCCTTCTTCTTGATACAAGG 770339 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||||||||| | || || || ||||||||| || |||||| | |||| ||| | Sbjct 770199 TCTCAGAGTGAATGTTTTCAATCATGATCTGGAATCCATAGAAGCACTTGGCTTCAGCAA 770140 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 || ||||| || |||| | ||| | |||||||||||||| || ||||| ||| | Sbjct 770139 TTTGGACTTCGTTGCAGAAACGCTCTACAAGATTCTCATTGACGATACCATCCGAACTGG 770080 Query 48549 CAAAGAAGGCAAGGACA 48565 ||||||| ||||| ||| Sbjct 770079 CAAAGAAAGCAAGCACA 770063 >seq12 Length=2893134 Score = 91.5 bits (100), Expect = 3e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 213486 GCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCG 213545 || |||||||| || ||||| || ||||| || | || || ||||| | ||||| Sbjct 1077835 GCAATGCTGGCAAGATTGCATACAGCCACTTCATCAGGACTTGAATACTCGACAATCTCT 1077894 Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605 ||||| || ||||||||| ||||||||||| ||| || || || || |||||| | ||| Sbjct 1077895 GTGCAAAGATTGCTGCATTTGATGGTGCCCAAGTTTTGCTGATTGGA-TTTGCGATTGCA 1077953 Query 213606 -GAATCCTTGTAGAGCATG 213623 | ||||||||| | |||| Sbjct 1077954 TGCATCCTTGTATAACATG 1077972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531938332160