Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq73 125 1e-23 seq12 105 1e-17 seq45 96.9 6e-15 >seq73 Length=1220876 Score = 125 bits (138), Expect = 1e-23 Identities = 513/798 (64%), Gaps = 17/798 (2%) Strand=Plus/Minus Query 221705 GCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCT 221764 |||| |||||||| || || || ||||| || || | ||||| | || ||| Sbjct 415076 GCAATACTGGCCAGATTGCATACAGCCACTTCATCAGGAGAAGAATACTCGACAATTTCT 415017 Query 221765 GTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCA 221824 || || || |||||||| |||||||| |||| || | ||||| || ||||||||| Sbjct 415016 GTGCAAAGATTGCTGCATTTGATGGTACCCAAGTTTTGCTGATTGGATTTGCGATTGCAT 414957 Query 221825 GCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCC 221884 || |||||||| | ||| || ||||| ||||| || || || ||| ||| | | Sbjct 414956 GCATCCTTGTATAACATGAATGGACCACCAGTTTCTGTTTGTGCTTCCAAAATGGCATAC 414897 Query 221885 CAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC--CCTCGGTCTT-TTCATACCCG 221941 || |||| | || | ||| | || ||||| ||| || |||||| | Sbjct 414896 CAAAGTTTTTGTGCCTTGACCACC---TTACGTGCACGACCT---TCACGTTCATATCTC 414843 Query 221942 --GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGG 221999 ||||| ||| |||| ||||| | | || | | || || | | Sbjct 414842 AAGTATAATTCAT--CAAATGCATCACCCCATACATCTTGTAATCCAGGTGCTTCATCAG 414785 Query 222000 GACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCC 222059 |||| | |||||||| | || |||| || | |||| || | ||| || |||| Sbjct 414784 GACAGAAGAGACTCCAATCACCATTTTCTTCCACACGTCGCATAAACATGTCTGGAATCC 414725 Query 222060 ACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGAT 222119 ||| || | ||| | ||| | | || | ||| ||| ||| | ||| || | || || Sbjct 414724 ACAAGGCATAAAACAAATCACGTGCACGATTCTCTTCCTTGCCATGGTTCTTGCGCAAAT 414665 Query 222120 CCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTC 222179 ||||||| ||||| | |||| ||||| || |||| ||| | ||| | || || |||| Sbjct 414664 CCAAAAAGTCAAACACATCAGGATGCCATGGTTCCAAATACATGGCAAATGCACCAGGTC 414605 Query 222180 GCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTA 222239 ||||||| ||||| |||||||| | | | |||||| | || | | || | Sbjct 414604 GCTTGTTACCACCTTGATCCACATAACGAGCTGTATTGTTGAACACACGTAACATGGGAA 414545 Query 222240 CCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC 222299 | | |||||||| || ||||| || |||||| | || || | | ||| Sbjct 414544 CAATGCCGTTGGAATATCCATTGGTACCAGCAATGTAAGATCCAGTAGCACGAATGTTGT 414485 Query 222300 TGGCAGACATGCCGATACCACCGGCGTGT-TTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 | | | || |||||||| || ||| || || ||| |||| ||| |||| || || Sbjct 414484 GGATATTAAGACCAATACCACCTGC-TGTCTTGGAAATCTTGGCACAGGTCTTTAGTGTC 414426 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG- 222417 || ||||| || || || || ||||| | | ||| || || || || |||| ||| Sbjct 414425 TCATAAATGCCTTCAATTGAATCATCCTTCATGGTCAACAAGAAGCAGGAAGACAGCTGT 414366 Query 222418 AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGA 222477 || ||| | | || || || |||| || |||||| | ||||||||| | | | || Sbjct 414365 GGACGTGGAGTACCA-GCATTGAACAAGGTAGGACTGCCATGTGTAAAGAAACGCTCCGA 414307 Query 222478 CATCAGATCGTACGTCTC 222495 ||||| | ||| ||||| Sbjct 414306 CATCAAGTGGTAAGTCTC 414289 >seq12 Length=2893134 Score = 105 bits (116), Expect = 1e-17 Identities = 514/805 (64%), Gaps = 31/805 (4%) Strand=Plus/Plus Query 221705 GCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCT 221764 |||| |||||| || || || || ||||| || || | | ||||| | |||||| Sbjct 1077835 GCAATGCTGGCAAGATTGCATACAGCCACTTCATCAGGACTTGAATACTCGACAATCTCT 1077894 Query 221765 GTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCA 221824 || || || |||||||| |||||||| |||| || | ||||| || ||||||||| Sbjct 1077895 GTGCAAAGATTGCTGCATTTGATGGTGCCCAAGTTTTGCTGATTGGATTTGCGATTGCAT 1077954 Query 221825 GCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCC 221884 || |||||||| | ||| || ||||| ||||| || || || ||| || | | Sbjct 1077955 GCATCCTTGTATAACATGAATGGACCACCAGTTTCAGTTTGTGCTTCCAAGATAGCATAC 1078014 Query 221885 CAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTT-----TCATACC 221939 || || | | || | || | || ||||| ||| || ||||| Sbjct 1078015 CAAAGCTTTTGTGCCTTGACAACC---TTACGTGCAC-----GTCCTTCACGCTCATATT 1078066 Query 221940 CGGTATAGAGCATGTCAAA--CTTTTCACCGTACGCCTCG---TCCAGGC-CTGGACACC 221993 | ||| | | ||||| |||||| || || | | |||||| || ||| Sbjct 1078067 GGTGATACAACTCCTCAAATTCTTTTCCCCAAACTTCATGCAATCCAGGTGCTT--CACT 1078124 Query 221994 TGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCG 222053 ||| || | |||||||| | || || | || | |||||||| | ||| | Sbjct 1078125 TGGG----CAAAAGAGACTCCAATCACCATTTTCCTCAACACGTTGCATGAACAAGTCTG 1078180 Query 222054 GGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCC 222113 | ||||||| || | ||| | ||| | | || | || || ||| | ||| || | Sbjct 1078181 GAATCCACAAGGCATAAAACAAATCACGTGCACGATTTTCTTCTTTGCCATGGTTCTTGC 1078240 Query 222114 TCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGC 222173 | ||||||||| ||||| | |||| ||||| || || ||||||| ||| | || | Sbjct 1078241 GTAAATCCAAAAAGTCAAAGACATCAGGATGCCATGGTTCAAGATAGATGGCAAATGCAC 1078300 Query 222174 CGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAG-AGCGTTGAAGATGCGAAGG 222232 | ||||||||||| ||||| ||||||| ||| ||| | |||| | | || || Sbjct 1078301 CAGGTCGCTTGTTACCACCTTGATCCA-CATAGCGAGCAGTATTGTTGTATACACGTAGC 1078359 Query 222233 GTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTC 222292 | || || | || ||||| || ||||| || ||| || | || || | Sbjct 1078360 ATGGGCACAATGCCATTGGAATAGCCATTGGTACCAGCAATATATGAGCCAGATGCACGA 1078419 Query 222293 AGGTTACTGGCAGACATGCCGATACCACC-GGCGTGTTTCGAGATCATGGCGCAGCTCTT 222351 | ||| | | | || |||||||| | ||| ||| || ||| || ||| |||| Sbjct 1078420 ATGTTGTGGATATTAAGACCAATACCACCTGCCGTCTTT-GAAATCTGGGAGCAAATCTT 1078478 Query 222352 GAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGA 222411 ||| || || |||||| || || ||||| ||||| | ||| || ||||| || || Sbjct 1078479 GAGTGTCTCATAGATGCCTTCAATGGAGTCTTCCTTCATAGTCAACAAGAAACATGATGA 1078538 Query 222412 CATCTG-AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC 222470 | || || ||| | | ||| || || || || |||||||| ||||| || |||| Sbjct 1078539 TAATTGTGGACGAGGT-GTGCCGGCATTGAAAAGTGTTGGACTGGCATGTGTGAAATAGC 1078597 Query 222471 CCCTAGACATCAGATCGTACGTCTC 222495 | ||||||| | ||| || || Sbjct 1078598 GCTCGGACATCAAGTTGTAAGTTTC 1078622 >seq45 Length=1879501 Score = 96.9 bits (106), Expect = 6e-15 Identities = 162/227 (71%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTG 25873 ||||||||| ||| || |||||| | |||||||| || ||| | | | |||| Sbjct 1418586 GCATCAAGAAGAAAGCTGACTGGGCCTTCAAGTGGATTT-CATCCAATGG--TTCCTTTG 1418530 Query 25874 GCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933 || || || || || ||||||||||| || |||||||| || || || ||||| Sbjct 1418529 CTGAACGTCTTGTTGCTTTTGCTGCTGTAGAAGGCATCTTCTTTTCTGGCTCTTTTGCTT 1418470 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTT-CCAACGAGCT 25991 ||||||| ||||||||| | | | || | ||| || |||| |||||| ||| ||||| Sbjct 1418469 CCATCTTTTGGCTCAAG-AAACGTGGTCTTATG-CCAGGCTTGACTTTTAGCAATGAGCT 1418412 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 ||| | | || || ||||| |||| |||||||| || |||||| Sbjct 1418411 CATTTCCCGTGATGAAGGTCTTCACACTGATTTTGCTTGTTTGCTCT 1418365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843940818560