Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq12 138 6e-28 seq73 114 7e-21 >seq12 Length=2893134 Score = 138 bits (152), Expect = 6e-28 Identities = 337/505 (67%), Gaps = 8/505 (2%) Strand=Plus/Plus Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 |||| || || | | ||||||| |||||| |||||| | ||| || || ||||||| Sbjct 1078124 TTGGGCAAAAGAGACTCCAATCACCATTTTCCTCAACACGTTGCATGAACAAGTCTGGAA 1078183 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 |||||| |||||||| ||||| | || | |||||||||| || || ||||| || Sbjct 1078184 TCCACAAGGCATAAAACAAATCACGTGCACGATTTTCTTCTTTGCCATGGTTCTTGCGTA 1078243 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 ||| || || ||||| | ||| | ||||||||||| | |||||| ||||| ||| Sbjct 1078244 AATCCAAAAAGTCAAAGACATCAGGATGCCATGGTTCAAGATAGATGGCAAATGCACCAG 1078303 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 || || ||||||||||| || || | ||||| | ||| | || | ||| | Sbjct 1078304 GTCGCTTGTTACCACCTTGATCCACATAGCGAGCAGTATTGTTGTATACACGTAGCATGG 1078363 Query 26130 GAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATAT 26189 | || | ||| | ||| | || || || | | ||| | || || | | | ||| | Sbjct 1078364 GCACAATGCCATTGGAATAGCCATTGGTACCAGCAATATATGAGCCAGATGCACGAATGT 1078423 Query 26190 CGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAA--TAGCTGCACAATCTGAAAC 26247 ||| || || ||| || ||||| ||| ||||||| | | ||| ||||| | Sbjct 1078424 TGTGGATATTAAGACCAATACCACCTGCCGTCTTTGAAATCTGGGAGCA-AATCT-TGAG 1078481 Query 26248 TGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAA 26307 ||| || | || |||| ||| || | ||||| || || ||||| || ||||| Sbjct 1078482 TGTCTCATAGATGCCTTCAATGGAGTCTTCCTTCATAGTCAACAAGAAACATGATGATAA 1078541 Query 26308 TTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC 26367 ||| | | ||| ||| || | ||| || | ||| || | ||||| || |||| | || Sbjct 1078542 TTGTGGACGAGGTGTGCCGGCATTGAAAAGTGTTGGACTGGCATGTGTGAAATAGCGCTC 1078601 Query 26368 --ACTCAAAGCTGTATAAGTTTCAA 26390 || ||| || |||||||||| Sbjct 1078602 GGACATCAAGTTG--TAAGTTTCAA 1078624 >seq73 Length=1220876 Score = 114 bits (126), Expect = 7e-21 Identities = 223/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATC 25951 |||||||| | | ||||||| |||||| || || |||||| | ||||||||| Sbjct 414785 GGACAGAAGAGACTCCAATCACCATTTTCTTCCACACGTCGCATAAACATGTCTGGAATC 414726 Query 25952 CACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGA 26011 |||| |||||||| ||||| | || | | ||||| || || || ||||| | | Sbjct 414725 CACAAGGCATAAAACAAATCACGTGCACGATTCTCTTCCTTGCCATGGTTCTTGCGCAAA 414666 Query 26012 TCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTT 26071 || || || ||||| | ||| | ||||||||||| ||||| || ||||| ||| | Sbjct 414665 TCCAAAAAGTCAAACACATCAGGATGCCATGGTTCCAAATACATGGCAAATGCACCAGGT 414606 Query 26072 CTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGA 26131 | || ||||||||||| || || | || || | ||||| || ||||| ||| Sbjct 414605 CGCTTGTTACCACCTTGATCCACATAACGAGCTGTATTGTTGAACACACGTAACATGGGA 414546 Query 26132 ACTAATCCAGTT-GAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATC 26190 || ||| | ||| ||| |||| || || | | ||| | ||||| || | | ||| | Sbjct 414545 AC-AATGCCGTTGGAATATCCATTGGTACCAGCAATGTAAGATCCAGTAGCACGAATGTT 414487 Query 26191 GTGAGCATGAATACCGATTCCACCAGC 26217 ||| || || ||| || ||||| || Sbjct 414486 GTGGATATTAAGACCAATACCACCTGC 414460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039771789550