Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq24 232 9e-56 seq74 226 4e-54 >seq24 Length=199139 Score = 232 bits (256), Expect = 9e-56 Identities = 312/430 (73%), Gaps = 6/430 (1%) Strand=Plus/Plus Query 47758 TCAACAAA-CTGACGGACAGAATATTGATTTC--CTGTGGCAATAACAAAATCATCAGGT 47814 |||||||| ||| || |||| ||| |||| | ||||| | |||||| || ||||| Sbjct 183603 TCAACAAAGCTG-CGCACAG--TATGAGTTTCACCAGTGGCCAAAACAAAGTCTTCAGGC 183659 Query 47815 TCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCA 47874 | |||||||||||||| | |||||| | ||||||||||| | ||||||||||| ||| Sbjct 183660 TTGTCTTGTTGAAGCATGAGCCACATGCCTTCGACATAATCACGTGCATGTCCCCAATCA 183719 Query 47875 CGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTT 47934 || ||||||| || || ||||| ||||| ||||| || | ||| | Sbjct 183720 CGCTTGGCATCAATGTTACCAAGATACAAACATTCTTGACGTCCCAAATGGATATCAGCA 183779 Query 47935 AATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTA 47994 | || | |||||||| | || |||||||| ||||| | ||||||||| ||||| Sbjct 183780 ACAGCACGAGTAATCTTTCTTGTCACAAAAGTACGGCCACGGCGTGGAGATTCGTGATTG 183839 Query 47995 AAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAG 48054 || || |||||| | || |||||||| | || |||||||||||||| |||||| Sbjct 183840 AAGAGGATACCATTGCATGCATACATGTCATAGGATTCACGATAGTTGACAGTGATCCAG 183899 Query 48055 TACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTC 48114 || ||||| | || ||||||||||| || ||||| ||||||||||| ||||| || | Sbjct 183900 TAACCATATAACTTGGCAACACCATAGGGTGAACGAGGATAGAAAGGAGTGGTTTCCTTT 183959 Query 48115 TGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACC 48174 |||||||| || ||| |||||||| | || || || ||||| |||| |||||| Sbjct 183960 TGTGGAGTTTCAACCACTTTACCATACAACTCGGAAGTAGAAGCTTGGTAGAAACGAACA 184019 Query 48175 CTATCTTCCA 48184 | |||| || Sbjct 184020 CGGTCTTGCA 184029 >seq74 Length=1162362 Score = 226 bits (250), Expect = 4e-54 Identities = 423/616 (69%), Gaps = 9/616 (1%) Strand=Plus/Minus Query 47575 TTAGGTTCCCAACCCAATTTTTTCTTTGCCTTAGAGGCATCACCTAATAAGGTCTCTACT 47634 ||| | | |||||| | || || || ||||| | | |||||| | || || ||| Sbjct 830964 TTACGCTTCCAACCAAGTTGTTCATTGGCCTTGGCAGGATCACCGAGCAAAAGTTCAACT 830905 Query 47635 TCAGCAGGACGGAAATATTTAGAGTCAATTCTGATA---ACCGTTTTACCATCAGAATCA 47691 || ||||| ||||| || || | ||||| | | | ||| || | |||| ||| Sbjct 830904 TCGGCAGGGCGGAAGTACTTGGGATCAATACGAACACGGACCTTTCCAGTTTCAGCATCC 830845 Query 47692 ATACCAACTTCATCAAGACCAGAACCTTCCCATCTAATATTCATATCAAAATAAGGTGCA 47751 | |||| ||||| | ||| ||||||||| ||| || || | || | Sbjct 830844 TTGCCAATTTCATTGACACCTTCACCTTCCCAAACAATCTTGCGTCCAGTAACAGCAAAA 830785 Query 47752 GATTCCTCAACAAA-CTGACGGACAGAATATTGATTTC--CTGTGGCAATAACAAAATCA 47808 | | |||||||| ||| || |||| | | |||| | ||||| | |||||| || Sbjct 830784 GCCTTTTCAACAAAGCTG-CGCACAG--TGTGAGTTTCACCAGTGGCCAAAACAAAGTCT 830728 Query 47809 TCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCC 47868 ||||| | |||||||||||||| | |||||| | |||||||| || | ||||| ||| Sbjct 830727 TCAGGCTTGTCTTGTTGAAGCATGAGCCACATGCCTTCGACATAGTCACGAGCATGACCC 830668 Query 47869 CAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATT 47928 || ||||| ||||||| || || ||||| ||||| ||||| || | ||| Sbjct 830667 CAATCACGCTTGGCATCAATGTTACCAAGATACAAACATTCTTGACGTCCCAAATGGATA 830608 Query 47929 GCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCA 47988 | | || | || ||||| | || |||||||| ||||| | ||||||||| Sbjct 830607 TCAGCAACAGCACGAGTGATCTTTCTTGTCACAAAAGTACGGCCACGGCGTGGAGATTCG 830548 Query 47989 TGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACT 48048 ||||| || ||||||||| | || |||||||| | || |||||||||||||| Sbjct 830547 TGATTGAAGAGAATACCATTGCATGCATACATATCATAGGATTCACGATAGTTGACAGTG 830488 Query 48049 ATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTC 48108 |||||||| ||||| | || ||||||||||| || ||||| ||||||||||| ||||| Sbjct 830487 ATCCAGTAACCATATAACTTGGCAACACCATAGGGTGAACGAGGATAGAAAGGAGTGGTT 830428 Query 48109 TCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATA 48168 || | |||||||| || ||| |||||||| | || || || ||||| |||| | Sbjct 830427 TCCTTTTGTGGAGTTTCAACCACTTTACCATACAACTCGGAAGTAGAAGCTTGGTAGAAA 830368 Query 48169 CGAACCCTATCTTCCA 48184 ||||| | ||||| || Sbjct 830367 CGAACACGATCTTGCA 830352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665493784417680