Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 113 8e-20 seq4 111 3e-19 seq9 102 1e-16 >seq1 Length=3088551 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| || | |||| ||| || ||| || || || Sbjct 606250 ATACCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCA 606191 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | | ||| || | ||| ||||| ||||| || || | || || || ||| Sbjct 606190 GACAAAGTACGACCATCTTCGAGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGA 606131 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || ||| | || | ||| ||||| ||| || |||||| Sbjct 606130 GGAATGCCTTCCTTATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCA 606071 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| ||||| || || || | || || ||||| || ||||| Sbjct 606070 ACTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| || | |||| || || ||||| ||||| Sbjct 606022 ATACCACCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCT 605963 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | | ||| || | |||||| || ||||| || | | ||| || || ||| Sbjct 605962 GACAAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGA 605903 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || ||| | || | ||| ||||| ||| || |||||| Sbjct 605902 GGAATGCCTTCCTTATCCTGGATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCA 605843 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| ||||| || || || | || || ||||| || ||||| Sbjct 605842 ACTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| || || || | | ||| || | |||||| || ||||| || || | Sbjct 606430 ATATTGTAGTCTGACAAAGTACGACCATCCTCAAGTTGTTTGCCTGCAAAGATCAAGCGT 606371 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || ||||| || ||||| |||||||| || ||| | || | ||| ||||| | Sbjct 606370 TGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTGTTCTTGACATTCTCAATAGAA 606311 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || ||||||||||| | ||| ||||| || || || | || || ||||| || ||| Sbjct 606310 TCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGC 606251 Query 193359 AT 193360 || Sbjct 606250 AT 606249 >seq4 Length=1091430 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| || | |||| || || || || Sbjct 753950 ATTTGCATACCACCACGAAGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTG 753891 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || || | ||| || | |||||| || ||||| || || | || || Sbjct 753890 TAGTCAGACAAAGTACGGCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGG 753831 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||| || ||| | || | |||| ||||| ||| ||| Sbjct 753830 TCTGGAGGAATACCTTCCTTGTCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAA 753771 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| | ||| || || || || || | || || ||||| |||||||| Sbjct 753770 GACTCAACTTCCAAAGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 >seq9 Length=614693 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || || ||||| || | || ||||||||||| || ||||| || ||||| || Sbjct 95593 TGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATC 95534 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 ||| | || | ||| ||||| |||||| || || ||||| || || ||||| || || Sbjct 95533 TTGTTCTTGACATTCTCAATAGAATCGGACGATTCCACTTCAAGTGTGATAGTCTTGCCA 95474 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| |||||||| Sbjct 95473 GTAAGAGTCTTGACAAAGATTTGCAT 95448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899653567819680