Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq9 114 3e-20 seq2 104 5e-17 seq45 87.8 4e-12 seq34 84.2 4e-11 >seq9 Length=614693 Score = 114 bits (126), Expect = 3e-20 Identities = 175/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 192307 ATACCACCTC-TAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAAT 192364 |||||||| | |||| || | || ||||||||||| | ||| ||| || ||||| |||| Sbjct 95449 ATACCACCACGTAAG-CGAAGCACCAAATGTAAAGTCGACTCCTTTTGA-ATATTGTAAT 95392 Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 | || | ||| || |||| || | |||||| ||||| || || | | || || || | Sbjct 95391 CGGAAAGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCG 95332 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 | || |||||||| || || || || || | || || || |||||||| || |||| Sbjct 95331 GAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATT 95272 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAG 192544 ||||||| | || ||||| || ||||| | || || | ||| || |||||| | | | Sbjct 95271 CTACTTCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCATTGTGTAAT 95212 Query 192545 AAAA 192548 |||| Sbjct 95211 AAAA 95208 >seq2 Length=1153633 Score = 104 bits (114), Expect = 5e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 |||||||||||| |||||||| || || || | || |||| || ||||| || || | Sbjct 770557 ACATGCAAAATCGGTATGTAATCCTTCATCACGTGAAATAAGCTCGTTACTGAATGTAAG 770498 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 |||||||| ||||| | |||||| |||||||| || || |||||| || ||||||||| Sbjct 770497 ACCTGGCATCAATCCACGCTTTTTGAGCCAAAAGATAGAAGCAAAAGAACCAGAAAAGAA 770438 Query 49943 TATACCCTCGAC 49954 || || || || Sbjct 770437 GATGCCTTCCAC 770426 >seq45 Length=1879501 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 ||||| ||||||||||| || | ||| || || | || || | ||||| |||||||| Sbjct 1418370 AAACAAGCAAAATCAGTGTGAAGACCTTCATCACGGGAAATGAGCTCATTGCTAAAAGTC 1418429 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940 || |||||||| | || | || || |||||||| || || |||||| | ||||||| Sbjct 1418430 AAGCCTGGCATAAGACCACGTTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAAAAG 1418489 Query 49941 AATATACCCTCGACACACGCAAATGC 49966 || || || || ||| ||||| || Sbjct 1418490 AAGATGCCTTCTACAGCAGCAAAAGC 1418515 >seq34 Length=2204315 Score = 84.2 bits (92), Expect = 4e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||||||||| | |||||| | || || || | ||| | ||| || ||| | Sbjct 1854178 GTTCAATAATACCACCACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGT 1854119 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || ||||| || || || |||| || | ||| || ||||| || || || | || | Sbjct 1854118 TGTAGTCAGACAAAGTACGACCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGCT 1854059 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 | || || || || ||||| |||||||| || || | || ||||| Sbjct 1854058 GGTCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGCTTGACATT 1854013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479066589900