Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq12 159 1e-33 seq73 138 3e-27 seq56 138 3e-27 seq34 104 7e-17 seq8 95.1 4e-14 seq45 93.3 1e-13 seq67 91.5 4e-13 seq2 89.7 2e-12 seq1 87.8 5e-12 >seq12 Length=2893134 Score = 159 bits (176), Expect = 1e-33 Identities = 262/377 (69%), Gaps = 3/377 (1%) Strand=Plus/Plus Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 || || | ||| || ||||| |||| || || || || | ||||||||| ||| Sbjct 1078219 TCTTCTTTGCCATGGTTCTTGCGTAAATCCAAAAAGTCAAAGACATCAGGATGCCATGGT 1078278 Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086 || ||||| || ||||| |||| | |||| ||||| ||||| ||||| |||||| Sbjct 1078279 TCAAGATAGATGGCAAATGCACCAGGTCGCTTGTTACCACCTTGATCCACATAGCGAGCA 1078338 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || || ||| | |||| |||||| || | ||| ||||||||| ||||||||| || | Sbjct 1078339 GTATTGTTGTATACACGTAGCATGGGCACAATGCCATTGGAATAGCCATTGGTACCAGCA 1078398 Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTA 156206 |||| || ||||||| |||| || || |||| || ||||||||||||| | || Sbjct 1078399 ATATATGAGCCAGATGCACGAATGTTGTGGATATTAAGACCAATACCACCTGCCGTCTTT 1078458 Query 156207 GAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT 156266 ||||| || | ||| ||| | || | | || |||||||| || || || | ||| Sbjct 1078459 GAAATCTGGGAGCAAATCTTGAGTGTCTCATAGATGCCTTCAATGGAGTCTTCCTTCATA 1078518 Query 156267 GATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGT 156326 | | | | || || |||||| || || ||||| || || ||||| ||||| || Sbjct 1078519 GTCAACAAGAAACATGATGATAATTGTGGACGAGGTGTGCCGGCATTGAAAAGTGTTGGA 1078578 Query 156327 GTTGCATGAATAAAATA 156343 | ||||| | ||||| Sbjct 1078579 CTGGCATGTGTGAAATA 1078595 >seq73 Length=1220876 Score = 138 bits (152), Expect = 3e-27 Identities = 247/360 (69%), Gaps = 3/360 (1%) Strand=Plus/Minus Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 ||| || | ||| || ||||| || | || || || || | ||||||||| ||| Sbjct 414693 CTCTTCCTTGCCATGGTTCTTGCGCAAATCCAAAAAGTCAAACACATCAGGATGCCATGG 414634 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGC 156085 |||| |||||| ||||| |||| | |||| ||||| ||||| ||||| ||||| Sbjct 414633 TTCCAAATACATGGCAAATGCACCAGGTCGCTTGTTACCACCTTGATCCACATAACGAGC 414574 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 || || ||||| |||| || ||| |||| ||| || |||||| |||||||| || Sbjct 414573 TGTATTGTTGAACACACGTAACATGGGAACAATGCCGTTGGAATATCCATTGGTACCAGC 414514 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 ||| | || |||| | |||| || || |||| || ||||||||||||| || Sbjct 414513 AATGTAAGATCCAGTAGCACGAATGTTGTGGATATTAAGACCAATACCACCTGCTGTCTT 414454 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | || || ||||| || | |||| |||||||| |||||||| | ||| Sbjct 414453 GGAAATCTTGGCACAGGTCTTTAGTGTCTCATAAATGCCTTCAATTGAATCATCCTTCAT 414394 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 | | | |||| ||| | || || ||||| || ||||| ||||| | ||||| Sbjct 414393 GGTCAACAAGAAGCAGGAAGACAGCTGTGGACGTGGAGTACCAGCATTGAACAAGGTAGG 414334 >seq56 Length=1351323 Score = 138 bits (152), Expect = 3e-27 Identities = 259/376 (69%), Gaps = 5/376 (1%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| | ||||| ||| | || || || || | | ||| | | || || |||| Sbjct 692515 ATCAAAACGACCAGGACGCATCAAAGCAGGATCAAGAACATCAGGACGATTGGTGCCTGC 692456 Query 288912 CAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA-ATTTGATTAA 288970 ||||||||| | | |||| ||| | ||| |||||||| || | || | |||||| | Sbjct 692455 CAATACAACGACATGTTCGCTTTCATCAAAACCATCCAT-CTCGACAAGCAATTGATTCA 692397 Query 288971 GTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttAC 289030 | || ||| | ||||||||| ||| | || || || | || | | ||||| Sbjct 692396 GAGTGCTTTCACGTTCATCATTGCCACC-CATGTGTCCACCT--TTGCCACGTGCTTTAC 692340 Query 289031 CAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAA 289090 ||| |||||||||||| |||| |||||| | || |||| || | | ||| | |||| Sbjct 692339 CAATAGCATCAATTTCATCAACGAAAATAATGCAAGGAGCGTTCTTCTTTGCAGTAGCAA 692280 Query 289091 ATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGG 289150 | || || | ||||||||| | |||| ||||||| |||| || |||||||||||| | | Sbjct 692279 ACAAATCACGTACACGGGAAGGACCAACACCAACAAACATCTCCACAAATTCAGAACCAG 692220 Query 289151 ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTAC 289210 | || | ||| | ||| ||||| || || ||| | |||| ||| ||||||| Sbjct 692219 AGACGCTCAAGAAAGGAACACCAGCTTCACCAGCAGTAGCCTTGGCCAAAAGCGTCTTAC 692160 Query 289211 CTGTTCCAGGTGGTCC 289226 | || ||||| || || Sbjct 692159 CAGTACCAGGAGGACC 692144 >seq34 Length=2204315 Score = 104 bits (114), Expect = 7e-17 Identities = 183/262 (70%), Gaps = 10/262 (4%) Strand=Plus/Plus Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||| || || | |||||| ||| || | |||||||||||||| |||||||| Sbjct 103432 CAAACAAATCGCGTACACGTCTTGCACCCACGCCAACATACATTTCATCAAATTCA---- 103487 Query 289148 CGGATACT--TGAAT--GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 | | ||| |||| ||| | ||| |||||| ||||| ||||| || |||| |||| Sbjct 103488 CTGCCACTCATGAAAAAGAAAGGAACACCTGCTTCACCTGCCACTGCTCTTGCCAAAAGT 103547 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 ||||| ||||| ||||| || || || | ||| || || |||| ||| ||| | | Sbjct 103548 GTCTTTCCTGTACCAGGAGGACCTGTCAACAAAACACCTTTGGGTAATTT-GCCTCCCAA 103606 Query 289264 GACT-TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 || || | || | || |||| | ||||| || | |||||| | || | ||| || Sbjct 103607 CTCTGTAAACTTGTGTGGATTCTTGAGAAATTGAACCAGTTCCTCCAACTCCTGTTTGGC 103666 Query 289323 CTCATCACATCCTGCTACATCA 289344 |||||||||||| ||||||| Sbjct 103667 TTCATCACATCCTTGTACATCA 103688 >seq8 Length=697591 Score = 95.1 bits (104), Expect = 4e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 251496 AATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555 ||||||||||||||||||||||||||| ||||| | |||||||| || | | ||| || Sbjct 484148 AATCATACAATCACGCTCCATTTCACCAAAACGTAATCCACCATCACGTGAACGACCTTC 484089 Query 251556 GGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATT 251615 |||| ||||| || ||| | | |||||| | || ||||| |||||||| Sbjct 484088 CACAGGTTGACGTGTAAGAATCTGAACAGGACCACGTGCACGACTATGAATCTTATCATC 484029 Query 251616 TACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 ||||| ||||| | ||| ||||| | | ||||| || || Sbjct 484028 CACCATGTGCTTCAAACGTTGGTAATAAGTAGGACCCATAAA 483987 Score = 91.5 bits (100), Expect = 4e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 233274 CACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTTG 233333 |||| ||| ||||||||||||||| ||||||||||||| ||| | ||||||||| || Sbjct 484158 CACCATGACTAATCATACAATCACGCTCCATTTCACCAAAACGTAATCCACCATCACGTG 484099 Query 233334 ACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 | | ||| | || | |||||| || | || | | | ||||| | |||||| || | Sbjct 484098 AACGACCTTCCACAGGTTGACGTGTAAGAATCTGAAC-AGGACCACGTGCACGACTATGA 484040 Query 233393 ATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTCT 233452 || ||||| | ||||| ||||||| | |||||| ||||| ||||| | || | Sbjct 484039 ATCTTATCATCCACCATGTGCTTCAAACGTTGGTAATAAGTAGGACCCATAAACACTTGT 483980 Query 233453 GC 233454 || Sbjct 483979 GC 483978 >seq45 Length=1879501 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/221 (70%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || || |||||| |||||||||| | || ||||| ||| || | Sbjct 1418592 TTCCTTGCATCAAGAAGAAAGCTGACTGGGCCTTCAAGTGGATTTCATCCAATGGTTCC- 1418534 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||||| ||||||||||||| ||||| ||||| || || ||| | | Sbjct 1418533 --TTTGCTGAACGTCTTGTTGCTTTTGCTGCTGTAGAAGGCATCTTCTTTTCTGGCTC-T 1418477 Query 133557 TCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615 | ||| || || |||||||| || || |||||| || | || || || |||| || Sbjct 1418476 TTTGCTTCCATCTTTTGGCTCAAGAAACGTGGTCTTATGCCAGGCTTGACTTTTAGCAAT 1418417 Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 || || ||||| | || || | |||||||| || ||||| Sbjct 1418416 GAGCTCATTTCCCGTGATGAAGGTCTTCACACTGATTTTGC 1418376 >seq67 Length=1302434 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 301814 GAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAA 301873 || || |||||| ||| ||||||||| | || || || |||| ||||||||| Sbjct 827534 GATTTCCTTCAA-ACGTGGAACACCAAGAGTGACATTCTTACTGGAT---ACACCAGCAT 827479 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCA 301933 | |||||||| |||| ||| | ||||| | || ||||||||| |||||| |||||| Sbjct 827478 AATGGAAAGTGTTCAAAGTCATCTGAGTGGCAGGTTCACCAATAGATTGTGCAGCAATCG 827419 Query 301934 TACCAACCATTTCTCCTGGTGCTACAAT 301961 | ||||||||||| || || || || || Sbjct 827418 TGCCAACCATTTCACCAGGAGCAACCAT 827391 >seq2 Length=1153633 Score = 89.7 bits (98), Expect = 2e-12 Identities = 153/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 133439 CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT 133498 |||||||| || ||||| | || ||||| || ||||||| ||| | | | Sbjct 770339 CCTTGTATCAAGAAGAAGGCAGAATGGGCATTTCGATGGATCTCTTCCAATGGATC---T 770395 Query 133499 TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558 |||||| ||||| ||||| || |||| ||| || ||||| || || |||| | || Sbjct 770396 TTTGCTGAACGTCTAGTTGCATTCGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTT- 770454 Query 133559 TGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGA 133617 |||| |||| |||||||| ||||||||||| | | || || || || |||||| Sbjct 770455 TGCTTCTATCTTTTGGCTCAAAAAGCGTGGATTGATGCCAGGTCTTACATTCAGTAACGA 770514 Query 133618 ACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 ||||||||| | || || | | | || ||||| ||||| Sbjct 770515 GCTTATTTCACGTGATGAAGGATTACATACCGATTTTGC 770553 >seq1 Length=3088551 Score = 87.8 bits (96), Expect = 5e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||||||| |||||||||||| || | || || | ||| || | ||| | | ||| | Sbjct 2531949 TTTACCAATAGCATCAATTTCATCCACAAAGATAATACAAGGTGCATTCTTCTTTGCAGT 2532008 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||||| | || | ||||||||| | |||| ||||||| ||||||| |||||||| || Sbjct 2532009 AGCAAACATATCACGTACACGGGAAGGACCAACACCAACAAACATTTCCACAAATTCTGA 2532068 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || || | ||| | ||| ||||| || || ||| | || | |||||| Sbjct 2532069 TCCTGACACGCTCAAGAAAGGAACACCGGCTTCACCAGCAGTAGCCTTGGCTAAAAGTGT 2532128 Query 289206 CTTACCTGTTCCAGGTGGTCC 289226 || || || ||||| || || Sbjct 2532129 TTTGCCAGTACCAGGAGGACC 2532149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816204532938