Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 6e-12 seq3 87.8 2e-11 >seq12 Length=2893134 Score = 89.7 bits (98), Expect = 6e-12 Identities = 176/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || || ||||| || || | ||| | || || ||||||||||| | ||| ||||| Sbjct 1078321 TGATCCACATAGCGAGCAGTATTGTTGTATACACGTAGCATGGGCACAATGCCATTGGAA 1078380 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | ||| ||||| || || | || | ||| | || || | ||||| || || Sbjct 1078381 TAGCCATTGGTACCAGCAATATATGAGCCAGATGCACGAATGTTGTGGATATTAAGACCA 1078440 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || |||| ||| || || | | ||| ||||| || || |||||||| || Sbjct 1078441 ATACCACCTGCCGTCTTTGAAATCTGGGAGCAAATCTTGAGTGTCTCATAGATGCCTTCA 1078500 Query 1630246 ATCGAGTCGGCCTTCAT-GTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||||| ||||||| ||| || ||||| || || || ||| || | | ||||| Sbjct 1078501 ATGGAGTCTTCCTTCATAGTCAACAAGAAA-CATGATGATAATTGTGGACGAGGTGTGCC 1078559 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 ||| ||||| || || || Sbjct 1078560 GGCATTGAAAAGTGTTGG 1078577 >seq3 Length=1146452 Score = 87.8 bits (96), Expect = 2e-11 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 1592132 TGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCC 1592191 |||||| | ||| | || ||||| || || || ||||| ||||||| || ||| Sbjct 219401 TGGGACCAAAAGTATATGGAAGTCGATCAAGAGACTCTATTTGATGTGATCCTTGCTGCC 219342 Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251 || || || || |||||||| || | ||| |||| || ||| | || ||||| |||||| Sbjct 219341 AATTATCTTGATATCAAGCCATTGTTGGATGTTGGTTGTAAGACCGTTGCCAATATGATC 219282 Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT-AACAT 1592292 ||||||||| | |||||||| || | || |||| ||||| Sbjct 219281 AAGGGCAAGAGTGCTGAGGAGATTCG-ACGAACTTTCAACAT 219241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107133127213458