Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9 129 5e-25 seq4 127 2e-24 seq1 111 1e-19 seq12 95.1 1e-14 seq2 95.1 1e-14 seq34 89.7 5e-13 >seq9 Length=614693 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || ||||| || || ||||| ||| | || Sbjct 95448 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACACTTGAAGTGGAATCGTCC 95507 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || | ||||| |||||||| ||||| || ||||| ||||| Sbjct 95508 GATTCTATTGAGAATGTCAAGAACAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 95567 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || |||||||| || || | | | || ||||| ||| Sbjct 95568 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGACGGCCGTACTCTTTCTGATTACAAC 95627 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGA 24934 || ||||| ||||| || | |||||||| || || ||||| || || ||| Sbjct 95628 ATCCAAAAAGAATCCACGTTGCACTTGGTATTACGCTTGCGTGGCGGTGGA 95678 Score = 125 bits (138), Expect = 6e-24 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| |||||| | || || || || || || || || || | ||||||||| | Sbjct 95217 ACAATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACATTGGAAGTAGAATCA 95276 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || | | |||| || || ||||||||||| ||||| |||||||| ||||| || Sbjct 95277 TCTGATTCTATTGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCGGAC 95336 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATT 24878 || |||||| | || || || || ||||| || || ||| ||| | || | || |||| Sbjct 95337 CAGCAACGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGTCG-TACAC-TTTCCGATT 95394 Query 24879 ATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | || ||||||||||| ||||| |||| |||||| | || || || || || Sbjct 95395 ACAATATTCAAAAGGAGTCGACTTTACATTTGGTGCTTCGCTTACGTGGTGG 95446 >seq4 Length=1091430 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| |||||| | || || || ||||| || ||||| || | ||||| || | Sbjct 753256 ACCATGCAAATCTTTGTCAAGACACTTACCGGCAAGACTATCACTTTGGAAGTCGAGTCT 753315 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || | | |||| || || | ||||||||||| || ||||| || ||||| || Sbjct 753316 TCTGATTCCATTGAAAACGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGAC 753375 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||||||||||||||||| || ||||| || || ||| | | |||| ||||| Sbjct 753376 CAGCAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCTGATTAC 753435 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| |||||||| || || || ||||||||| Sbjct 753436 AACATCCAAAAGGAGTCCACTCTTCACTTGGTG 753468 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || ||||| | ||||| || | | Sbjct 753715 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACTTTGGAAGTTGAGTCTTCT 753774 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || || | |||||||||||||| ||||| || ||||| || || Sbjct 753775 GATTCTATTGAAAATGTCAAGAACAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAG 753834 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || ||||| || || ||| | | |||| || || ||| Sbjct 753835 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGCCGTACTTTGTCTGACTACAAC 753894 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || ||||||||||| || || ||||||||| Sbjct 753895 ATCCAAAAGGAATCTACTCTTCACTTGGTG 753924 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || || || | ||||| ||| || | Sbjct 753487 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAAGTTGAATCCTCT 753546 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || || | ||||||||||| || ||||| || ||||| || || Sbjct 753547 GATTCTATTGAAAACGTTAAGAATAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAG 753606 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || ||| || || || || || ||| | | |||| ||||| ||| Sbjct 753607 CAACGTCTCATTTTTCGTGGCAAGCAACTTGAAGATGGCCGTACTTTGTCTGATTACAAC 753666 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || ||||||||||| || || ||||||||| Sbjct 753667 ATCCAAAAGGAATCTACTCTTCACTTGGTG 753696 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || || || | ||||| ||| | | Sbjct 753943 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAAGTTGAATCTTCT 754002 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || || | ||||||||||| || ||||| || || || ||||| Sbjct 754003 GATTCTATTGAAAATGTCAAGAACAAGATCCAAGATAAGGAAGGTATCCCACCAGATCAG 754062 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || || || || || || || ||| | | | || || || ||| Sbjct 754063 CAACGTCTCATTTTCGCTGGCAAGCAACTTGAAGATGGTCGTACTCTTTCTGACTACAAC 754122 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||| || || || ||| | |||||||| Sbjct 754123 ATCCAAAAGGAGTCCACTCTTCACCTCGTGTTGCG 754157 >seq1 Length=3088551 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || ||||| || | ||||| || | | Sbjct 606021 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCT 606080 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || | ||||||||||| || ||||| || ||||| || || Sbjct 606081 GATTCTATTGAGAATGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAG 606140 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || || || || ||| | | |||| ||||| ||| Sbjct 606141 CAACGCTTGATCTTTGCAGGAAAGCAACTCGAAGATGGTCGTACTTTGTCTGATTACAAC 606200 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||| || || || |||||||| Sbjct 606201 ATTCAAAAGGAGTCTACTCTTCACTTGGT 606229 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || ||||| || | || || || | | Sbjct 605565 ATGCAAATCTTCGTCAAGACCCTTACTGGCAAGACTATCACCTTGGAGGTGGAGTCATCT 605624 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || || | ||||| |||||||| ||||| || || || ||||| Sbjct 605625 GATTCCATTGAAAACGTCAAGAACAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 605684 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || ||||| || || ||| | | ||||||| || ||| Sbjct 605685 CAACGTCTCATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAAC 605744 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||| || || || |||||||| Sbjct 605745 ATTCAAAAGGAGTCTACTCTTCACTTGGT 605773 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || ||||| || | ||||| || | | Sbjct 606249 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCT 606308 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || | ||||||||||| || ||||| || ||||| || || Sbjct 606309 GATTCTATTGAGAATGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAG 606368 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || ||||| || |||||| | | ||||||| || || Sbjct 606369 CAACGCTTGATCTTTGCAGGCAAACAACTTGAGGATGGTCGTACTTTGTCAGACTACAAT 606428 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || ||||||||||| || || ||| Sbjct 606429 ATCCAAAAGGAATCCACTCTTCAC 606452 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || ||||| || | ||||| || | | Sbjct 605793 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCT 605852 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || || | |||||||| || || ||||| || ||||| || || Sbjct 605853 GATTCTATTGAAAACGTCAAGAACAAGATCCAGGATAAGGAAGGCATTCCTCCAGACCAG 605912 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || ||||| || || ||| | | ||||||| || || Sbjct 605913 CAGCGTCTCATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAAT 605972 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| || || |||||||| Sbjct 605973 ATCCAAAAGGAATCTACTCTTCACTTGGT 606001 >seq12 Length=2893134 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24773 GAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTG 24832 |||| || || |||||||||||||| || || ||||| ||||| || || ||||||||| Sbjct 1461456 GAAAATGTCAAGCAAAAGATCCAAGATAAGGAGGGAATTCCTCCAGACCAGCAACGTTTG 1461515 Query 24833 ATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAG 24892 || || || || || || || |||||| | | |||| || || || || |||||| Sbjct 1461516 ATTTTCGCTGGCAAGCAACTCGAGGATGGTCGTACTTTGTCTGACTACAATATCCAAAAG 1461575 Query 24893 GAATCGACACTACACTTGGT 24912 || || || || |||||||| Sbjct 1461576 GAGTCTACTCTTCACTTGGT 1461595 >seq2 Length=1153633 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 126031 GTCGCTTTCGCTATAGTGGAAGGCGTGTTTTTCTCGGGTAGTTTTGCGGCTAtttttttt 126090 || || |||||| |||||||||| | || || || ||| |||||| |||| |||| Sbjct 770411 GTTGCATTCGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCTTCTATCTTTTGG 770470 Query 126091 ATAAAGACAAAGGGTATA---ATGCCCGGTCTAACGTTCAGCAACGAGTTGATTTCTCGT 126147 | || |||| || | ||||| ||||| || ||||| |||||| | ||||| ||| Sbjct 770471 CTCAA---AAAGCGTGGATTGATGCCAGGTCTTACATTCAGTAACGAGCTTATTTCACGT 770527 Query 126148 GACGAAGGACTCCATACGGACTTTGCATGTCT 126179 || |||||| | ||||| || ||||||||||| Sbjct 770528 GATGAAGGATTACATACCGATTTTGCATGTCT 770559 >seq34 Length=2204315 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || ||||| || ||||| || || ||||||||||| || Sbjct 1854016 GTCAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCAGCAACGTTTGATTTTC 1854075 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || || || || ||| | | |||| || || ||||| |||||||| || Sbjct 1854076 GCTGGCAAGCAACTTGAAGATGGTCGTACTTTGTCTGACTACAACATCCAAAAGGAGTCC 1854135 Query 24899 ACACTACACTTGGT 24912 || || |||||||| Sbjct 1854136 ACTCTTCACTTGGT 1854149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897183844720