Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq45 123 4e-22 seq1 114 2e-19 seq12 113 7e-19 seq4 100 5e-15 >seq45 Length=1879501 Score = 123 bits (136), Expect = 4e-22 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || ||||| |||||| | |||| ||| || | | Sbjct 85192 TGTACTTGGTGACAGCCTTGGTACCTTCAGAGACAGCGTGCTTAGCCAATTCACCAGGAA 85133 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| ||||| || || || |||||||| || | ||| ||| |||||||| || Sbjct 85132 GGATAAGGCGAACAGCAGTTTGGATCTCACGAGAAGAGATGGTGGAACGCTTGTT-GTAA 85074 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | || || | | || || |||| |||||||||||||| ||||| Sbjct 85073 GCAGCAAGCTTGGAAGCTTCAGAAGCAATACGTTCGAAAATGTCGTTGACAAAGGAGTTG 85014 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 | || ||||| | ||||||||||| || ||| ||||| || ||||| Sbjct 85013 AGAATAGACATGGCCTTGTTGGAGATACCAGTGTCAGGGTGAACTTGCTT 84964 Score = 96.9 bits (106), Expect = 5e-14 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| ||||||||||| || ||||| ||||| |||||| ||| || | | Sbjct 79985 TGTATTTGGTGACAGCCTTGGTACCTTCAGAGACAGCGTGTTTGGCCAATTCACCAGGAA 80044 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || || || ||||| || | ||| ||| |||||||| || Sbjct 80045 GAATAAGACGAACAGCAGTTTGAATCTCACGAGAAGAGATGGTGGAACGCTTGTT-GTAA 80103 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | || || | |||| || || | || || |||||||| ||||| Sbjct 80104 GCAGCAAGTTTGGATGCTTCAGATGCGATACGTTCAAAGATATCATTGACAAAGGAGTTG 80163 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 | || ||||| | ||||||||||| || ||| ||||| || ||||| Sbjct 80164 AGAATGGACATGGCCTTGTTGGAGATACCAGTGTCAGGGTGAACTTGCTT 80213 Score = 87.8 bits (96), Expect = 3e-11 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 |||||||||||||| ||||| | || ||||||| ||||| | || || |||| Sbjct 1418106 TCGAAAAAGTTGGTTTTGCCTTGAAGAGAGATCATGTCCATAAAGTCAAATGGATTGGTA 1418165 Query 793986 GTCAGGTAGTGCTTCTCGC-ACCCGAG-CGACGCAAGCAGGCGGTCGGCGACGAATTCAA 794043 | ||| ||||| | | |||| || |||| ||||| ||| ||||| || ||||||| Sbjct 1418166 GCATTGTAATGCTTGTTGAGACCCAAGGCGAC--AAGCAAGCGATCGGCAACAAATTCAA 1418223 Query 794044 TGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAG 794092 |||| || |||||||| ||| ||||| || || || | |||||| || Sbjct 1418224 TGTATTGACACATGAGCTTGGCATTCATACCAATCAGGGACACGGGAAG 1418272 >seq1 Length=3088551 Score = 114 bits (126), Expect = 2e-19 Identities = 181/257 (70%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| ||||| || ||||| |||||| |||||| ||| || | | Sbjct 1269452 TGTACTTGGTAACAGCCTTAGTACCTTCAGAGACAGCGTGCTTGGCCAATTCACCAGGAA 1269393 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || || |||||||| || | ||| ||| |||||||| || Sbjct 1269392 GGATAAGACGAACAGCAGTTTGGATCTCACGAGAAGAGATAGTGGAACGCTTGTT-GTAA 1269334 Query 1485590 GCGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | || || | | || || |||| ||||| |||||||||||||| Sbjct 1269333 GCAGCAAGCTTGGAAGCTTCAGAAGCAATACGTTCGAAAATGTCATTGACAAACGAGTTG 1269274 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | || ||||| | |||||||| ||||| ||| || || || ||||| | || | Sbjct 1269273 AGAATGGACATGGCCTTGTTGGAAATGCCAGTGTCAGGATGGACTTGCTTCAAGACACGG 1269214 Query 1485709 TAAACAAAGGACGAGTA 1485725 |||| |||| ||||| Sbjct 1269213 TAAATGTAGGAAGAGTA 1269197 >seq12 Length=2893134 Score = 113 bits (124), Expect = 7e-19 Identities = 179/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || || |||||||| || || | ||| | || || ||||||||||||| ||| ||||| Sbjct 1078321 TGATCCACATAGCGAGCAGTATTGTTGTATACACGTAGCATGGGCACAATGCCATTGGAA 1078380 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | ||| ||||| || || | || | ||| || || || | ||||| || || Sbjct 1078381 TAGCCATTGGTACCAGCAATATATGAGCCAGATGCACGAATGTTGTGGATATTAAGACCA 1078440 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || || |||| ||| || || | | ||| | || || ||||| |||||||| || Sbjct 1078441 ATACCACCTGCCGTCTTTGAAATCTGGGAGCAAATCTTGAGTGTCTCATAGATGCCTTCA 1078500 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||||| ||||||| ||||| || || || || ||| || || | |||||| Sbjct 1078501 ATGGAGTCTTCCTTCATAGTCAACAAGAAACATGATGATAATTGTGGACGAGGTGTGCCG 1078560 Query 2073781 GCATTGAAGAGCGTGGG 2073797 |||||||| || || || Sbjct 1078561 GCATTGAAAAGTGTTGG 1078577 Score = 102 bits (112), Expect = 1e-15 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || || || |||||| |||||| ||| || | | Sbjct 2317414 TGTACTTGGTGACAGCCTTGGTACCTTCAGAAACAGCGTGCTTGGCCAATTCACCAGGGA 2317473 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || || |||||||| || | ||| ||| ||||||||| | Sbjct 2317474 GAATAAGACGAACAGCAGTTTGGATCTCACGAGAAGAGATGGTGGAACGCTTGTTA-TAA 2317532 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | || || | | || || || | || || |||||||| ||||| Sbjct 2317533 GCAGCAAGCTTGGAAGCTTCAGAAGCAATACGTTCAAAGATATCATTGACAAAGGAGTTG 2317592 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 | ||| ||||| | ||||||||||| || ||| || || || ||||| Sbjct 2317593 AGGATAGACATGGCCTTGTTGGAGATACCAGTGTCAGGATGGACTTGCTT 2317642 >seq4 Length=1091430 Score = 100 bits (110), Expect = 5e-15 Identities = 178/257 (69%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||||||||| || || || |||||| |||||| ||| || | | Sbjct 653400 TGTACTTGGTAACAGCCTTGGTACCTTCAGAAACAGCGTGCTTGGCCAATTCACCAGGAA 653459 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || || ||||| || || | || ||| |||||||| || Sbjct 653460 GGATAAGACGAACAGCAGTTTGGATTTCACGAGAAGAAATAGTGGAACGCTTGTT-GTAA 653518 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || | || || | | || || || | || || |||||||| ||||| Sbjct 653519 GCAGCAAGCTTGGAAGCTTCAGAAGCAATACGTTCAAAGATATCATTGACAAAGGAGTTG 653578 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || ||| ||||| || ||||| | || | Sbjct 653579 AGGATGGACATGGCCTTGTTGGAGATACCAGTGTCAGGGTGAACTTGCTTCAAAACACGG 653638 Query 1485709 TAAACAAAGGACGAGTA 1485725 |||| |||| ||||| Sbjct 653639 TAAATGTAGGAAGAGTA 653655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916238528282486