Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq9 113 3e-20 seq4 105 4e-18 seq1 105 4e-18 seq34 89.7 3e-13 seq12 87.8 1e-12 >seq9 Length=614693 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| ||||| || || || || || | || |||| || ||||| || || ||||| Sbjct 95411 CTCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAA 95352 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || ||||||||||| | || | || |||||||| | || ||||| |||||| Sbjct 95351 AATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTT 95292 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || || ||| | || || || | || ||||||||||| ||||| ||||| || Sbjct 95291 TTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGAC 95232 Query 34966 AAAGATCTGCAT 34977 |||||| ||||| Sbjct 95231 AAAGATTTGCAT 95220 >seq4 Length=1091430 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||| || ||||| || || || | | || |||| Sbjct 753470 AGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCT 753411 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || || ||||||| |||||||||||| | || | || ||||| || Sbjct 753410 TCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCT 753351 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || | |||||| | | || || ||| | |||||| || | || || ||| Sbjct 753350 TGGATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTC 753291 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || || ||||| |||||||| |||||| Sbjct 753290 TTGCCGGTAAGTGTCTTGACAAAGATTTGCATG 753258 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || ||||| || ||||| ||||| || | | || |||| Sbjct 753926 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCT 753867 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || || ||||||| |||||||||||| | || | || |||||||| Sbjct 753866 TCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCT 753807 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || | ||||| | | || || ||| | ||| || || | || |||||| Sbjct 753806 TGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTC 753747 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| |||||||| ||||| Sbjct 753746 TTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 >seq1 Length=3088551 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| || |||||| |||||||| || || || | | || |||| Sbjct 606232 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCATCT 606173 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||||| |||||||||||| | || | || ||||| || Sbjct 606172 TCGAGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCT 606113 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || | ||||| || || || || ||| | ||| || || | || || | Sbjct 606112 TGGATCTTGTTCTTGAC--ATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAG 606055 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | ||||| |||||||||||||| Sbjct 606054 TCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||| || || || ||||| || | | || |||| Sbjct 606460 AGGACAAGGTGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCC 606401 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || || ||||||| |||||||||||| | || | || ||||| || Sbjct 606400 TCAAGTTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCT 606341 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || | ||||| || || || || ||| | ||| || || | || || | Sbjct 606340 TGGATCTTGTTCTTGAC--ATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAG 606283 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | ||||| |||||||||||||| Sbjct 606282 TCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606249 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| || ||||| || || || ||||| || | | || |||| Sbjct 606004 AGGACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCT 605945 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || || ||||| || || ||||||||| | || | || ||||| || Sbjct 605944 TCAAGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCC 605885 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || | |||||| | | || || ||| | ||| || || | || || ||| Sbjct 605884 TGGATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTC 605825 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| |||||||||||||| Sbjct 605824 TTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 >seq34 Length=2204315 Score = 89.7 bits (98), Expect = 3e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| |||||| || ||||| ||||| || | | || |||| Sbjct 1854152 AGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGACCATCT 1854093 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || ||||| |||| |||||||||||| | || | || ||||| || Sbjct 1854092 TCAAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCT 1854033 Query 34886 TTTATTTTTTGTTTGAC 34902 | || ||||| ||||| Sbjct 1854032 TGAATCTTTTGCTTGAC 1854016 >seq12 Length=2893134 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| || |||||| || || || ||||| || | | || |||| Sbjct 1461598 AGGACCAAGTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGACCATCC 1461539 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || ||||| |||| |||||||||||| | || | |||||||| || Sbjct 1461538 TCGAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCT 1461479 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCA 34918 | || ||||| ||||| | | ||||| ||| Sbjct 1461478 TGGATCTTTTGCTTGACATTTTCAATCGAGTCA 1461446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692506265806