Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 2e-13 >seq1 Length=3088551 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || | || || || || || || || || ||| | || || || ||| Sbjct 605794 TGCAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCT- 605852 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||| ||||| |||| || || || || || || ||| ||||||||||| || || || Sbjct 605853 GATTCTATTGAAAACGTCAAGAACAAGATCCAGGATAAGGAAGGCATTCCTCCAGACCAG 605912 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | ||||| |||||||| |||||| | || ||| | | || || |||| || ||| Sbjct 605913 CAGCGTCTCATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAAT 605972 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || ||||| ||||| ||| | || || || Sbjct 605973 ATCCAAAAGGAATCTACTCTTCACTTGGT 606001 Score = 89.7 bits (98), Expect = 8e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || | || || || || || || || || ||| | || || || ||| Sbjct 606250 TGCAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCT- 606308 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||| ||||| | ||||| || || || || ||| ||| ||||||||||| || || || Sbjct 606309 GATTCTATTGAGAATGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAG 606368 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || |||||||| |||||| | || ||| | | || || |||| || ||| Sbjct 606369 CAACGCTTGATCTTTGCAGGCAAACAACTTGAGGATGGTCGTACTTTGTCAGACTACAAT 606428 Query 146211 ATACAAAAAGAATCGACT 146228 || ||||| ||||| ||| Sbjct 606429 ATCCAAAAGGAATCCACT 606446 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | || || | || || || || || || | || || || ||| Sbjct 605566 TGCAAATCTTCGTCAAGACCCTTACTGGCAAGACTATCACCTTGGAGGTGGAGTCATCT- 605624 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||| | ||| |||| || || || || || ||| || ||||||||||| || ||||| Sbjct 605625 GATTCCATTGAAAACGTCAAGAACAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 605684 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | ||||| |||||||| |||||| | || ||| | | || || |||| || || Sbjct 605685 CAACGTCTCATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAAC 605744 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || ||||| || || ||| | || || || Sbjct 605745 ATTCAAAAGGAGTCTACTCTTCACTTGGT 605773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786165672796080