Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4 141 7e-29 seq9 140 2e-28 seq1 132 4e-26 >seq4 Length=1091430 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||| || ||||| ||||| ||||| || || | | || || Sbjct 753930 ACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCC 753871 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||| ||| | ||||| | |||||| || || |||||||| || || Sbjct 753870 ATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTT 753811 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || | |||||| |||| | || |||||| || ||||| | ||| || Sbjct 753810 GTCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAAT 753751 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| || || || ||||| || ||||| Sbjct 753750 GGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||| ||||| || ||||| ||||| ||||| | | || ||| Sbjct 753474 ACGAAGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACC 753415 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||| ||| | ||||| | |||||| || || ||||| || || || Sbjct 753414 ATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTT 753355 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || | ||||| |||| | | |||||| || ||||| | ||| || Sbjct 753354 ATCTTGGATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGAT 753295 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| || | || || ||||| || ||||| Sbjct 753294 AGTCTTGCCGGTAAGTGTCTTGACAAAGATTTGCAT 753259 >seq9 Length=614693 Score = 140 bits (154), Expect = 2e-28 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 29542 ACATCATTTTATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTT 29601 ||||||| | | || || || | ||| || | ||||| || | ||||||||||||| Sbjct 95692 ACATCATGATCTTGTCCACCGCCACGCAAGCGTAATACCAAGTGCAACGTGGATTCTTTT 95633 Query 29602 TGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAAT 29661 || ||||| ||||| | || || || || || || ||||||||||| | ||||| Sbjct 95632 TGGATGTTGTAATCAGAAAGAGTACGGCCGTCTTCAAGCTGTTTGCCAGCGAAAATCAAA 95573 Query 29662 CTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACA 29721 | ||||||||| || |||||||| || |||||||| | || | |||||| | || | | Sbjct 95572 CGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTGTTCTTGACATTCTCAATA 95513 Query 29722 GTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATC 29781 | || || ||| |||||||| || ||||| |||||||| | || || ||||| || Sbjct 95512 GAATCGGACGATTCCACTTCAAGTGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATT 95453 Query 29782 TGCAT 29786 ||||| Sbjct 95452 TGCAT 95448 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 || || ||||||||||| | || || || |||||||| || ||||| | || || ||| Sbjct 95437 AAGCGAAGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAAAGTGTACGA 95378 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || |||||||||||||| | || | | |||||| ||||| ||||| || || Sbjct 95377 CCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCC 95318 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||| || | ||||| ||||| |||| | || ||||| ||||||||| | || Sbjct 95317 TTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTG 95258 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || ||||| | || || ||||| || |||||| Sbjct 95257 ATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCATT 95219 >seq1 Length=3088551 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || || || ||||||||||| ||||| | | || ||| Sbjct 606236 ACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACC 606177 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| |||||||| || || ||| | ||||| | |||||| || || ||||| || || || Sbjct 606176 ATCTTCGAGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTT 606117 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || | |||||| | || | || ||||| || ||||| | ||| || Sbjct 606116 ATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGAT 606057 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| || || || ||||| |||||||| Sbjct 606056 AGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| |||||||| ||||| || || || || | | || ||| Sbjct 606464 ACGAAGGACAAGGTGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACC 606405 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||| ||| | ||||| | |||||| || || ||||| || || || Sbjct 606404 ATCCTCAAGTTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTT 606345 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || | |||||| | || | || ||||| || ||||| | ||| || Sbjct 606344 ATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGAT 606285 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| || || || ||||| |||||||| Sbjct 606284 AGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606249 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || || || ||||||||||| || || | | || ||| Sbjct 605780 ACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACC 605721 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||| ||| | || | | ||||||||| || ||||| || || || Sbjct 605720 ATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTT 605661 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || | ||||| |||| | | ||||| || || || | || || Sbjct 605660 GTCTTGAATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGAT 605601 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 ||| |||||||| | ||| || || || || ||||| || ||| Sbjct 605600 AGTCTTGCCAGTAAGGGTCTTGACGAAGATTTGCATGTTGAAA 605558 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||| ||||| || || || || | | || ||| Sbjct 606008 ACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACC 605949 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||| ||| | || | | ||||| || || ||||| || || || Sbjct 605948 ATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTT 605889 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || | ||||| |||| | || ||||| || ||||| | ||| || Sbjct 605888 ATCCTGGATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGAT 605829 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| || || || ||||| |||||||| Sbjct 605828 AGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218852580434