Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 174 3e-38 seq4 170 4e-37 seq9 145 1e-29 seq12 118 2e-21 seq34 113 9e-20 >seq1 Length=3088551 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| |||||||| || || || || || ||||||| Sbjct 606249 TACCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAG 606190 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| ||||| ||||| ||||| |||||||| | | ||| || ||||||| Sbjct 606189 ACAAAGTACGACCATCTTCGAGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAG 606130 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| || ||||| ||||| | |||| | || | Sbjct 606129 GAATGCCTTCCTTATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAA 606070 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || |||||||| ||||| ||||| ||||| |||||||| Sbjct 606069 CTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||||||||| || || ||||| || || | Sbjct 606021 TACCACCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTG 605962 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| ||||| |||||||| || |||||||| || | || || ||||||| Sbjct 605961 ACAAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAG 605902 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || |||||||| | |||| | || | Sbjct 605901 GAATGCCTTCCTTATCCTGGATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAA 605842 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || |||||||| ||||| ||||| ||||| |||||||| Sbjct 605841 CTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 Score = 159 bits (176), Expect = 7e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| ||||| ||||| || || ||||| || || || | | | | ||| Sbjct 606464 ACGAAGGACAAGGTGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACC 606405 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || |||||||| || |||||||| | | ||| || |||||||| || |||||||| Sbjct 606404 ATCCTCAAGTTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTT 606345 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| ||||| || ||||| ||||| | |||| | || ||||||||||| || Sbjct 606344 ATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGAT 606285 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| ||||| |||||||| Sbjct 606284 AGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606249 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| |||||||| || || || || || || || | Sbjct 605793 TACCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTG 605734 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| ||||| |||||||| || |||||||| || | ||| |||||||| | Sbjct 605733 ACAAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGG 605674 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| || || |||||||| | |||| | || | Sbjct 605673 GAATGCCTTCCTTGTCTTGAATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCA 605614 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| || | ||||| || || || ||||| Sbjct 605613 CCTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTGACGAAGATTTGCAT 605565 >seq4 Length=1091430 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||||||||| || || || || || |||| Sbjct 753943 TACCACCACGAAGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 753884 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | || ||||| |||||||| || |||||||| | | ||| || ||||||| Sbjct 753883 ACAAAGTACGGCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAG 753824 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || ||||||||||| | |||| || || | Sbjct 753823 GAATACCTTCCTTGTCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAA 753764 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || |||||||| ||||| ||||| ||||| || ||||| Sbjct 753763 CTTCCAAAGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | ||| ||||| || || || || || || || ||||| ||| | | ||| Sbjct 754158 ACGCAACACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACC 754099 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| || ||||| || || || | ||| |||||||| || || |||||||| Sbjct 754098 ATCTTCAAGTTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATACCTTCCTT 754039 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| ||||| || ||||||||||| | |||| || ||| ||||||||||| || Sbjct 754038 ATCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGATTCAACTTCCAAAGTGAT 753979 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| ||||| || ||||| Sbjct 753978 GGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753943 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||||||||| || || || || ||||||| Sbjct 753715 TACCACCACGAAGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAG 753656 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | || ||||| ||||| || ||| ||| || || | ||| || ||||||| Sbjct 753655 ACAAAGTACGGCCATCTTCAAGTTGCTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAG 753596 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| || || |||||||| | |||| | ||| | Sbjct 753595 GAATACCTTCCTTATCTTGGATCTTATTCTTAACGTTTTCAATAGAATCAGAGGATTCAA 753536 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || |||||||| ||||| ||||| ||||| || ||||| Sbjct 753535 CTTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753487 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||| || || || || || || ||||||| Sbjct 753487 TACCACCACGAAGACGAAGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAG 753428 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| ||||| |||||||| || |||||||| | | ||| || ||||||| Sbjct 753427 ACAAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAG 753368 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| || || |||||||| | |||| || || | Sbjct 753367 GAATGCCTTCCTTATCTTGGATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGA 753308 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || |||||||| || | ||||| ||||| || ||||| Sbjct 753307 CTTCCAAAGTGATAGTCTTGCCGGTAAGTGTCTTGACAAAGATTTGCAT 753259 >seq9 Length=614693 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || || || | ||| || || || || ||||| ||||| | Sbjct 95448 TACCACCACGTAAGCGAAGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGG 95389 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| |||||||| ||||| || || || | ||| || || |||| Sbjct 95388 AAAGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAG 95329 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || |||||| || || |||||||| | |||| | ||||| Sbjct 95328 GAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTA 95269 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||| || || ||||| || || | ||||| ||||| || |||||| Sbjct 95268 CTTCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCATT 95219 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | ||| || | || ||||||| || |||||||| || || || |||||||| Sbjct 95675 ACCGCCACGCAAGCGTAATACCAAGTGCAACGTGGATTCTTTTTGGATGTTGTAATCAGA 95616 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | |||||||| || ||||| ||||| || || | | ||| ||||| ||||| Sbjct 95615 AAGAGTACGGCCGTCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGG 95556 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||||||||| || ||||| ||||| | ||| | ||| || Sbjct 95555 AATACCTTCCTTGTCTTGAATCTTGTTCTTGACATTCTCAATAGAATCGGACGATTCCAC 95496 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || |||||||| || | ||||| ||||| || ||||| Sbjct 95495 TTCAAGTGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 95448 >seq12 Length=2893134 Score = 118 bits (130), Expect = 2e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| |||||||| || || || ||||| || |||| Sbjct 1461615 TACCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAG 1461556 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| || || ||||| || ||||| || || | | ||| || ||||||| Sbjct 1461555 ACAAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAG 1461496 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCG 82746 | ||||| ||||||||||| |||||| || ||||||||||||| Sbjct 1461495 GAATTCCCTCCTTATCTTGGATCTTTTGCTTGACATTTTCAATCG 1461451 >seq34 Length=2204315 Score = 113 bits (124), Expect = 9e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||| || || || || || || || |||| Sbjct 1854169 TACCACCACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAG 1854110 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| ||||| ||||| || ||||| || || | | ||| || ||||||| Sbjct 1854109 ACAAAGTACGACCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAG 1854050 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCG 82746 | || ||||||||||||||||||||| || ||||| ||||||| Sbjct 1854049 GAATGCCTTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATCG 1854005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826269105086