Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq9 113 4e-20 seq12 89.7 5e-13 seq1 89.7 5e-13 seq73 86.0 6e-12 seq34 84.2 2e-11 seq4 84.2 2e-11 >seq9 Length=614693 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||||| || ||||| || || |||||||||||| | ||| |||| || || | Sbjct 95425 AAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAAA--GTGTACGACCATCTTCAA 95368 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || ||||| ||| ||||||| || |||||||| ||||| || ||||||||||| || Sbjct 95367 GTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGA 95308 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||||||||||| | |||| | || | | || || || | |||| ||| || | Sbjct 95307 TCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTCTTTC 95248 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| || || || || ||||| Sbjct 95247 CAGTGAGAGTCTTGACAAAGATTTGCAT 95220 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 ||||| ||||| || || |||||||| | || ||| ||| || ||||| |||| Sbjct 95644 GTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGT--ACGGCCGTCTTCAAGCTGTTTGC 95587 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | || ||||| || ||||| || ||||||||||| ||||| | || Sbjct 95586 CAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTGTTCT 95527 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| | |||| | ||||| || | |||| || ||||| || |||| Sbjct 95526 TGACATTCTCAATAGAATCGGACGATTCCACTTCAAGTGTGATAGTCTTGCCAGTAAGAG 95467 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 95466 TCTTGACAAAGATTTGCAT 95448 >seq12 Length=2893134 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 148829 GGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAG 148888 ||| |||||||| || ||| ||||| || ||||| || ||||| | ||| || Sbjct 1077843 GGCAAGATTGCATACAGCCACTTCATCAGGACTTGAATACTCGACAATCTCTGTGCAAAG 1077902 Query 148889 ATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTT 148948 ||||||||||||||| ||||| ||| | |||||| |||| ||||| || ||||| Sbjct 1077903 ATTGCTGCATTTGATGGTGCCCAAGTTTTGCTGATTGGATTTGCGATTGCATGCATCCTT 1077962 Query 148949 GTACAGCATGTACGGTCCGCCAGTTTC 148975 ||| | |||| | || || |||||||| Sbjct 1077963 GTATAACATGAATGGACCACCAGTTTC 1077989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || |||||||| || || || ||| | |||||||| |||||||| Sbjct 1461583 GTAGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGACCA-TCCTCGAGTTGCTTGCC 1461525 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | || |||||||| ||||| || || ||||| || |||||||||||| Sbjct 1461524 AGCGAAAATCAAACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGGATCTTTTGCTT 1461465 Query 133583 GAGCTGCTCAACCGTGTC 133600 || | |||| || ||| Sbjct 1461464 GACATTTTCAATCGAGTC 1461447 >seq1 Length=3088551 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || || |||||||| || || || ||| | || || || || ||||| Sbjct 605989 GTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCA-TCTTCAAGTTGTTTGCC 605931 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| ||||| ||||||||||| || |||||| | ||| Sbjct 605930 TGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGGATCTTGTTCTT 605871 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| | || | | ||| || || | |||| || ||||| |||| ||| Sbjct 605870 GACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTCAAAGT 605811 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 605810 CTTGACAAAGATCTGCAT 605793 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || |||||||| || || ||| | || ||||| ||||| || Sbjct 606217 GTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCA-TCTTCGAGTTGCTTTCC 606159 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || |||||||| ||||| ||||||||||| || |||||| | ||| Sbjct 606158 TGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTGTTCTT 606099 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| | || | | ||| || || | |||| || ||||| |||| ||| Sbjct 606098 GACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTCAAAGT 606039 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 606038 CTTGACAAAGATCTGCAT 606021 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || || || |||||||| || || || ||| | ||||| || || ||||| Sbjct 606445 GTGGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCA-TCCTCAAGTTGTTTGCC 606387 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || |||||||| ||||| ||||||||||| || |||||| | ||| Sbjct 606386 TGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTGTTCTT 606327 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| | || | | ||| || || | |||| || ||||| |||| ||| Sbjct 606326 GACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTCAAAGT 606267 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 606266 CTTGACAAAGATCTGCAT 606249 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || ||||| || || || ||| | || || || || ||||| Sbjct 605761 GTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCA-TCTTCAAGTTGTTTGCC 605703 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| || ||||| || || || |||||||||||||| ||||| | ||| Sbjct 605702 TGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGTTCTT 605643 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| | || | | |||||| || | ||||| || ||||| || || || Sbjct 605642 GACGTTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTCTTGCCAGTAAGGGT 605583 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| || |||||| Sbjct 605582 CTTGACGAAGATTTGCATG 605564 >seq73 Length=1220876 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 || ||| ||| |||||||| || ||| ||||| || | ||||| || || || Sbjct 415076 GCAATACTGGCCAGATTGCATACAGCCACTTCATCAGGAGAAGAATACTCGACAATTTCT 415017 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | ||| ||||||||||||||||| |||| ||| | |||||| |||| ||||| Sbjct 415016 GTGCAAAGATTGCTGCATTTGATGGTACCCAAGTTTTGCTGATTGGATTTGCGATTGCAT 414957 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 || |||||||| | |||| | || || |||||||| Sbjct 414956 GCATCCTTGTATAACATGAATGGACCACCAGTTTC 414922 >seq34 Length=2204315 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||| || || || ||| | || || || |||||||| Sbjct 1854137 GTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGACCA-TCTTCAAGTTGCTTGCC 1854079 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | || |||||||| ||||| ||||||||||| || ||||||||||| Sbjct 1854078 AGCGAAAATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGCTT 1854019 Query 133583 GAGCTGCTCAACCGTGTC 133600 || | ||||| || ||| Sbjct 1854018 GACATTCTCAATCGAGTC 1854001 >seq4 Length=1091430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || |||||||| || || ||| | || || || || ||||| Sbjct 753455 GTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCA-TCTTCAAGTTGTTTGCC 753397 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || |||||||| ||||| ||||||||||| || |||||| | ||| Sbjct 753396 TGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTGTTCTT 753337 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| | || | | ||| || || | |||| || |||||||| || || Sbjct 753336 GACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTCTTGCCGGTAAGTGT 753277 Query 133643 TTTTACGAAAATCTGCATGG 133662 || || || || ||||||| Sbjct 753276 CTTGACAAAGATTTGCATGG 753257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420352835760