Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq12 208 2e-48 seq73 168 2e-36 seq2 95.1 3e-14 seq45 87.8 4e-12 >seq12 Length=2893134 Score = 208 bits (230), Expect = 2e-48 Identities = 554/833 (67%), Gaps = 29/833 (3%) Strand=Plus/Minus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 ||| |||||||||||| || | || ||| | ||||| || |||||||| |||| Sbjct 1078753 ACTTTTTTGGTTTCAAGACATTGGAGCGTTCCTATTTGCTCAAGATCAATGGCAAGATTG 1078694 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 |||||||| ||||||||||| | |||||||| ||||||||||||| | || ||| Sbjct 1078693 CAGAACGTCCACAACACATGTTGATGCGTGTTGCAGTTGGTATTCATGGTGAAGACATTG 1078634 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATT-----CATGCTAC 110476 | |||| |||||| ||| | | | || || |||||| ||||| | Sbjct 1078633 ATGCTGCCATTGAAACTTACAACTTGAT--GTCC---GAGCGCTATTTCACACATGCCAG 1078579 Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGG 110536 ||| || || || || || || || | | |||||| | || || |||||| | | Sbjct 1078578 TCCAACACTTTTCAATGCCGGCACACCTCGTCCACAATTATCATCATG-TTTCTTGTTGA 1078520 Query 110537 A-ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTA--T 110593 || || || || || |||||||| || ||||| | || || | ||||| | | Sbjct 1078519 CTATGAAGGAAGACTCCATTGAAGGCATCTATGAGACACTCAAG--ATTTGCTCCCAGAT 1078462 Query 110594 TTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAA 110653 ||| || | | || || |||||| || | | || | ||||| || || || | Sbjct 1078461 TTCAAAGACGGCAGGTGGTATTGGTCTTAATATCCACAACATTCGTGCATCTGGCTCATA 1078402 Query 110654 TATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGA 110713 ||| || | || || ||| | ||| |||| || ||| || | || | |||| | Sbjct 1078401 TATTGCTGGTACCAATGGCTATTCCAATGGCATTGTGCCCATGCTACGTGTATACAACAA 1078342 Query 110714 CACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCT 110770 ||||| |||||| ||||||||||||| | || ||| ||||||| |||||||| Sbjct 1078341 TACTGCTCGCTATGTGGATCAAGGTGGTAACAAGCGACCTGGTGCATTTGCCATCTATCT 1078282 Query 110771 CGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGA 110830 ||||| |||||| | ||| | ||||| || || || | || || || || || || Sbjct 1078281 TGAACCATGGCATCCTGATGTCTTTGACTTTTTGGATTTACGCAAGAACCATGGCAAAGA 1078222 Query 110831 AGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACG 110890 |||| | | ||||||||||| |||||||| |||||||| |||| || |||||| |||| Sbjct 1078221 AGAAAATCGTGCACGTGATTTGTTTTATGCCTTGTGGATTCCAGACTTGTTCATGCAACG 1078162 Query 110891 TGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA 110950 |||| | |||||||| ||| ||| | || || | | ||||| | ||| Sbjct 1078161 TGTTGAGGAAAATGGTGATTGGAGTCTCTTTTGCCCAAGTGAAGCACCTGGATTGCATGA 1078102 Query 110951 TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCG 111010 || | |||||||| ||||| || | || | ||||||| ||||| | || | Sbjct 1078101 AGTTTGGGGAAAAGAATTTGAGGAGTTGTATCACCAATATGAGCGTGAAGG-ACGT---G 1078046 Query 111011 CAAACAA--ATTCCA--GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAA 111066 || || | || || ||| | ||||||| ||| | ||| ||||| ||||| Sbjct 1078045 CACGTAAGGTTGTCAAGGCACAAAAGCTTTGGTATGCTATCTTGGAAGCACAAACTGAAA 1077986 Query 111067 CTGGAACTCCTTATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCA 111118 |||| ||| | || || || || ||| ||| ||||||||||| ||||| Sbjct 1077985 CTGGTGGTCCATTCATGTTATACAAGGATGCAT-GCAATCGCAAATCCAATCA 1077934 >seq73 Length=1220876 Score = 168 bits (186), Expect = 2e-36 Identities = 468/711 (66%), Gaps = 19/711 (3%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 ||| ||| || ||||| || | || ||| ||||||| || |||||||| | | Sbjct 414158 ACTTTTTCGGCTTCAAGACATTGGAGCGTTCTTATTTGCTCAAGATCAATGGCAAAACAG 414217 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||||||||||||||| ||| || | |||||||| ||||||| ||||| | ||||| Sbjct 414218 CTGAACGTCCTCAACATATGATTATGCGTGTTGCTGTTGGTATCCATGGTGAAGATATCG 414277 Query 110422 AAGCTGTTATTGAATGTTA-----TGATGTATTAA-GTAAAAAGAAAGCTATTCATGCTA 110475 | ||| |||||| ||| |||||| | || | | |||| | Sbjct 414278 ATTCTGCTATTGAGACTTACCACTTGATGTCGGAGCGTTTCTTTACA------CATGGCA 414331 Query 110476 CTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAG 110535 ||||||| | || || || || ||| | ||| || |||| ||||| ||| | | Sbjct 414332 GTCCTACCTTGTTCAATGCTGGTACTCCACGTCCACAGCTGTCTTCCTGCTT-CTTGTTG 414390 Query 110536 GA-ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTAT 110593 || || |||||||| |||||||| |||||||| | || ||||| ||| || Sbjct 414391 ACCATGAAGGATGATTCAATTGAAGGCATTTATGAGACACT-AAAGACCTGTGCCAAGAT 414449 Query 110594 TTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAA 110653 ||| || | | || || |||||| || | | || | ||||| | | ||| | | Sbjct 414450 TTCCAAGACAGCAGGTGGTATTGGTCTTAATATCCACAACATTCGTGCTACTGGATCTTA 414509 Query 110654 TATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGA 110713 || || | || || ||| | || ||||||| |||||| | || |||||| | Sbjct 414510 CATTGCTGGTACCAATGGATATTCCAACGGCATTGTTCCCATGTTACGTGTGTTCAACAA 414569 Query 110714 CACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCT 110770 || || |||||| ||||||||||||| | || ||| ||||||| || ||| | Sbjct 414570 TACAGCTCGTTATGTGGATCAAGGTGGTAACAAGCGACCTGGTGCATTTGCCATGTATTT 414629 Query 110771 CGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGA 110830 ||||| |||||| | ||| | ||||| || || || | || || || || || || Sbjct 414630 GGAACCATGGCATCCTGATGTGTTTGACTTTTTGGATTTGCGCAAGAACCATGGCAAGGA 414689 Query 110831 AGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACG 110890 ||| | | ||||||||||| |||||||| |||||||| |||| | || ||| ||| Sbjct 414690 AGAGAATCGTGCACGTGATTTGTTTTATGCCTTGTGGATTCCAGACATGTTTATGCGACG 414749 Query 110891 TGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA 110950 ||| |||||||||| ||| ||| | |||||| || | ||||| || || Sbjct 414750 TGTGGAAGAAAATGGTGATTGGAGTCTCTTCTGTCCTGATGAAGCACCTGGATTACAAGA 414809 Query 110951 TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 ||||| || | | ||||| || | ||| | ||||||| ||||| Sbjct 414810 TGTATGGGGTGATGCATTTGATGAATTATACTTGAGATATGAACGTGAAGG 414860 Score = 84.2 bits (92), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | || ||||| || ||| | | || || ||||||||| | |||||| | Sbjct 1210499 TTCAATCGTCAGCCATCGCTTCATCGATTATCCATTATGGCTCATTTTGCCAAAGTCATG 1210558 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | ||||| || || |||| | ||| || | ||||| || || ||||| ||| Sbjct 1210559 CCTTGGAGAACATTCCGTTTCAATGAATGTGTATGCTCACCTTACAACGCTGATTTCGAT 1210618 Query 305456 GGAGATGAAATGAATATGCATGTACCTCA 305484 || |||||||||||||||||| |||| || Sbjct 1210619 GGTGATGAAATGAATATGCATTTACCACA 1210647 >seq2 Length=1153633 Score = 95.1 bits (104), Expect = 3e-14 Identities = 259/390 (66%), Gaps = 15/390 (4%) Strand=Plus/Plus Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGAT----TCAAGATGATTCCGCTAATTT 131850 || || ||||| ||||||||||| || |||||| || | ||| || ||| Sbjct 770345 ATCAAGAAGAAGGCAGAATGGGCATTTCGATGGATCTCTTCCA-ATGGATC------TTT 770397 Query 131851 TTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTG 131910 | || | | || || || || ||| || ||||| || |||||||| ||| |||| Sbjct 770398 TGCTGAACGTCTAGTTGCATTCGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGC 770457 Query 131911 TGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATT 131970 | ||||||||||||| || ||||||||||||||||| || || |||| || | | Sbjct 770458 TTCTATCTTTTGGCTCAAAAAGCGTGGATTGATGCCAGGTCTTACATTCAGTAACGAGCT 770517 Query 131971 CATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATAT-TAATCTATAGAAAATTTG 132029 || || | ||||||| ||| ||||| || ||||| || | | | | | | || Sbjct 770518 TATTTCACGTGATGAAGGATTACATACCGATTTTGC-ATGTCTCTTGTTTTCTCATCTTC 770576 Query 132030 CTGATAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGA 132089 | || | | | | | ||| | | || | ||||| ||| |||||||| Sbjct 770577 GTCATCAGCCATCTCATCAACGTATCCGTGATATCATTATTGAAGCTGTTAATATCGAGC 770636 Query 132090 AGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGA-CTCTATG 132148 | || || | ||||| ||||| ||| ||||||||| |||||||| | ||| ||| Sbjct 770637 AAGAATTCTTAACAGATGCTTTACCTGTTTCTTTGATTGGTATGAATGCCAAGCTC-ATG 770695 Query 132149 AAGGAGTACATTGAATTCGTTGCTGATCGT 132178 ||||||||||||| || || |||||| Sbjct 770696 TGTCAGTACATTGAATTTGTGGCGGATCGT 770725 >seq45 Length=1879501 Score = 87.8 bits (96), Expect = 4e-12 Identities = 154/224 (69%), Gaps = 9/224 (4%) Strand=Plus/Minus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAG---ATGATTCCG 131843 ||||| || || |||||||| || ||||| | || |||||| | ||| |||| Sbjct 1418592 TTCCTTGCATCAAGAAGAAAGCTGACTGGGCCTTCAAGTGGATTTCATCCAATGGTTCC- 1418534 Query 131844 CTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTG 131903 ||| || | | ||||| ||||||||| ||| ||||| || |||||||| || Sbjct 1418533 -----TTTGCTGAACGTCTTGTTGCTTTTGCTGCTGTAGAAGGCATCTTCTTTTCTGGCT 1418479 Query 131904 CTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCA 131963 |||| | | ||||||||||| ||||| ||||| | ||||| || | | || || Sbjct 1418478 CTTTTGCTTCCATCTTTTGGCTCAAGAAACGTGGTCTTATGCCAGGCTTGACTTTTAGCA 1418419 Query 131964 ATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCT 132007 || | |||| || | ||||||| | || ||||| |||||| Sbjct 1418418 ATGAGCTCATTTCCCGTGATGAAGGTCTTCACACTGATTTTGCT 1418375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811674753114