Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 105 2e-17 seq1 105 2e-17 seq9 100 7e-16 seq34 93.3 1e-13 seq12 87.8 4e-12 >seq4 Length=1091430 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || || || || |||||||||||||| || |||||| Sbjct 753262 CAAATCTTTGTCAAGACACTTACCGGCAAGACTATCACTTTGGAAGTCGAGTCTTCTGAT 753321 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| || ||| | ||||| ||||| || ||||| ||| || ||| ||| Sbjct 753322 TCCATTGAAAACGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAGCAA 753381 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || || | |||||||| | |||||| | ||||||||| || Sbjct 753382 CGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCTGATTACAACATC 753441 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || ||||| ||||||||| Sbjct 753442 CAAAAGGAGTCCACTCTTCAC 753462 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || |||||||||||||| ||| |||||| Sbjct 753946 CAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAAGTTGAATCTTCTGAT 754005 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| || ||| | ||||| ||||| || ||||| || || || ||| Sbjct 754006 TCTATTGAAAATGTCAAGAACAAGATCCAAGATAAGGAAGGTATCCCACCAGATCAGCAA 754065 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || ||||| | |||||||| | ||| | | || |||||| || Sbjct 754066 CGTCTCATTTTCGCTGGCAAGCAACTTGAAGATGGTCGTACTCTTTCTGACTACAACATC 754125 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| ||||||||||| || ||| | || || Sbjct 754126 CAAAAGGAGTCCACTCTTCACCTCGTGTTGCGTCTCCG 754163 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || |||||||||||||| ||| ||||| Sbjct 753490 CAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAAGTTGAATCCTCTGAT 753549 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| || ||| | ||||| ||||| || ||||| ||| || ||| ||| Sbjct 753550 TCTATTGAAAACGTTAAGAATAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAGCAA 753609 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || ||||| | |||||||| | |||||| | ||||||||| || Sbjct 753610 CGTCTCATTTTTCGTGGCAAGCAACTTGAAGATGGCCGTACTTTGTCTGATTACAACATC 753669 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || |||||||||||| Sbjct 753670 CAAAAGGAATCTACTCTTCAC 753690 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || || ||||||||||| || |||||| Sbjct 753718 CAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACTTTGGAAGTTGAGTCTTCTGAT 753777 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| || ||| | ||||| ||||| || ||||| ||| || ||| ||| Sbjct 753778 TCTATTGAAAATGTCAAGAACAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCAA 753837 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || || | |||||||| | |||||| | || |||||| || Sbjct 753838 CGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGCCGTACTTTGTCTGACTACAACATC 753897 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || |||||||||||| Sbjct 753898 CAAAAGGAATCTACTCTTCAC 753918 >seq1 Length=3088551 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || |||||||||||||| || ||||| Sbjct 606024 CAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCTGAT 606083 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| | ||||| ||||| || ||||| ||| || ||| ||| Sbjct 606084 TCTATTGAGAATGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAGCAA 606143 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || |||||||| | |||||||| | |||||| | ||||||||| | Sbjct 606144 CGCTTGATCTTTGCAGGAAAGCAACTCGAAGATGGTCGTACTTTGTCTGATTACAACATT 606203 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || ||||||||||||||| Sbjct 606204 CAAAAGGAGTCTACTCTTCAC 606224 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || || ||||| ||||| ||||| ||||| | | ||| Sbjct 605579 CAAGACCCTTACTGGCAAGACTATCACCTTGGAGGTGGAGTCATCTGATTCCATTGAAAA 605638 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| | ||||||||||| || ||||| ||| || || ||| | || ||||| Sbjct 605639 CGTCAAGAACAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAGCAACGTCTCATCTT 605698 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || | |||||||| | |||||| | || |||||| | || || ||||| Sbjct 605699 TGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAACATTCAAAAGGAGTC 605758 Query 206364 TACTCTTCAC 206373 |||||||||| Sbjct 605759 TACTCTTCAC 605768 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || |||||||||||||| || ||||| Sbjct 605796 CAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCTGAT 605855 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| || ||| | ||||| || || || ||||| ||| || ||| || Sbjct 605856 TCTATTGAAAACGTCAAGAACAAGATCCAGGATAAGGAAGGCATTCCTCCAGACCAGCAG 605915 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || || || | |||||||| | |||||| | || ||||| || Sbjct 605916 CGTCTCATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAATATC 605975 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || |||||||||||| Sbjct 605976 CAAAAGGAATCTACTCTTCAC 605996 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || |||||||||||||| || ||||| Sbjct 606252 CAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCTGAT 606311 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| | ||||| ||||| || ||||| ||| || ||| ||| Sbjct 606312 TCTATTGAGAATGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAGCAA 606371 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || || | || ||||| | |||||| | || ||||| || Sbjct 606372 CGCTTGATCTTTGCAGGCAAACAACTTGAGGATGGTCGTACTTTGTCAGACTACAATATC 606431 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || || || |||||||||||||| Sbjct 606432 CAAAAGGAATCCACTCTTCACCTTGT 606457 >seq9 Length=614693 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || ||||| ||||| || ||||| |||||||| ||| ||||| Sbjct 95223 CAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACATTGGAAGTAGAATCATCTGAT 95282 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| || ||||||||||| || || || ||||||||| |||||| ||| Sbjct 95283 TCTATTGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAGCAA 95342 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || || || | |||||||| | || | |||||||||| | Sbjct 95343 CGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGTCGTACACTTTCCGATTACAATATT 95402 Query 206353 CAGAAAGAGTCTACT 206367 || || ||||| ||| Sbjct 95403 CAAAAGGAGTCGACT 95417 >seq34 Length=2204315 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||||||||| || ||||| ||| || ||| ||| | | || ||| Sbjct 1854016 GTCAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCAGCAACGTTTGATTTTC 1854075 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | |||||||| | |||||| | || |||||| |||| || ||||| Sbjct 1854076 GCTGGCAAGCAACTTGAAGATGGTCGTACTTTGTCTGACTACAACATCCAAAAGGAGTCC 1854135 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 1854136 ACTCTTCAC 1854144 >seq12 Length=2893134 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 206221 GAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280 || || |||||| | | ||| || ||||||||||| ||||| || || |||||| Sbjct 1461438 GACAGCTCTGACTCGATTGAAAATGTCAAGCAAAAGATCCAAGATAAGGAGGGAATTCCT 1461497 Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340 || ||| ||| | | || ||||| || ||||| | || ||||| | |||||| | Sbjct 1461498 CCAGACCAGCAACGTTTGATTTTCGCTGGCAAGCAACTCGAGGATGGTCGTACTTTGTCT 1461557 Query 206341 GATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||| |||| || ||||||||||||||| Sbjct 1461558 GACTACAATATCCAAAAGGAGTCTACTCTTCAC 1461590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819679486154