Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-19 seq1 95.1 1e-14 >seq2 Length=1153633 Score = 109 bits (120), Expect = 5e-19 Identities = 285/428 (67%), Gaps = 9/428 (2%) Strand=Plus/Plus Query 46836 GTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTAC 46895 || |||||||| ||| |||||| | || ||||| || |||||| | || |||| Sbjct 770411 GTTGCATTCGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCTTCTATCTTTTGG 770470 Query 46896 ATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGAC 46955 | |||| || | ||||| || || || |||||||||||| | || || || || Sbjct 770471 CTCAAAAAGCGTGGATTGATGCCAGGTCTTACATTCAGTAACGAGCTTATTTCACGTGAT 770530 Query 46956 GAAGGACTACACACGGACTTTGCGTGTCTCTA-TTACAAGACGCGCGTGAATGAGAAATT 47014 |||||| |||| || || ||||| ||||||| || | ||| | | || || Sbjct 770531 GAAGGATTACATACCGATTTTGCATGTCTCTTGTTTTCTCATCTTCGTCA-TCAGCCAT- 770588 Query 47015 AAACTCGGACACG-ATCC-TGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTT 47072 ||| ||| |||| ||| || ||| || || || | ||||| | || || Sbjct 770589 ---CTCATCAACGTATCCGTGAT-ATCATTATTGAAGCTGTTAATATCGAGCAAGAATTC 770644 Query 47073 TTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATAT 47132 || || | || | || || | ||| | || ||||| || || ||||| | || Sbjct 770645 TTAACAGATGCTTTACCTGTTTCTTTGATTGGTATGAATGCCAAGCTCATGTGTCAGTAC 770704 Query 47133 ATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCT 47192 ||||| ||||||||||||||||| |||||| || || | || ||| | || | Sbjct 770705 ATTGAATTTGTGGCGGATCGTCTTTTGGTGGCTCTTGGCGTAGACAAGCATTATCATTCA 770764 Query 47193 CGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAG 47252 ||||| ||||| |||||| ||| ||||| || ||||||| ||||| || || ||| Sbjct 770765 ACCAATCCCTTTGACTTTATGGACATGATTTCTCTTCAGGGCAAGACCAACTTCTTTGAG 770824 Query 47253 AAACGAGT 47260 || ||||| Sbjct 770825 AAGCGAGT 770832 >seq1 Length=3088551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||||| |||||| || ||||| || | | Sbjct 605758 GACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCATCTTCAAGTTGTTTGCCTGCA 605699 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| || |||||||| || |||||||| || || ||| || | || | Sbjct 605698 AAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGTTCTTGACG 605639 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | | ||| | | |||||| || | || | || || ||||| || || || Sbjct 605638 TTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTG 605579 Query 132110 ATGAAAATCTGCATG 132124 | ||| || |||||| Sbjct 605578 ACGAAGATTTGCATG 605564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||||||||| || || ||||| ||||||||| || || || | | Sbjct 606214 GACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCATCTTCGAGTTGCTTTCCTGCA 606155 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | || || || |||||||| |||||||| ||||| || || | || | Sbjct 606154 AAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTGTTCTTGACA 606095 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | | ||| ||||| | || | || || ||||||| ||| || Sbjct 606094 TTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTG 606035 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 606034 ACAAAGATCTGCAT 606021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610759134640