Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq45 114 1e-20 seq9 102 7e-17 >seq45 Length=1879501 Score = 114 bits (126), Expect = 1e-20 Identities = 238/351 (68%), Gaps = 9/351 (3%) Strand=Plus/Plus Query 110044 TACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCATAAACTCGAA 110103 |||||| ||||||||||| || |||||||| | ||||| || | | |||||| || || Sbjct 1418096 TACACGCTTTTCGAAAAAGTTGGTTTTGCCTTGAAGAGAGATCATGTCCATAAAGTCAAA 1418155 Query 110104 AGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCGATCCGCCAC 110163 |||||| || || | || |||| | ||||| ||| ||||| ||||| || || Sbjct 1418156 TGGATTGGTAGCATTGTAATGCTTGTTGAGACCCAAGGCGACAAGCAAGCGATCGGCAAC 1418215 Query 110164 AAATTCAATATACTCGCACATGGACTGTACGTTCATGCCTAACATGGCAACTGGTAGAGC 110223 ||||||||| || | |||||| || | ||||| || | || || || || ||||| Sbjct 1418216 AAATTCAATGTATTGACACATGAGCTTGGCATTCATACCAATCAGGGACACGGGAAGAGC 1418275 Query 110224 GGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGAACATACTCAACACCTGGCT 110283 ||| || || || | |||||| | ||||| || || | |||| ||| | | | Sbjct 1418276 ATCAGTCAAGAATTCTTGTTCAATAGCAACAGCTTCAACAATGATAC-CAAGAATACGTT 1418334 Query 110284 CTTATGAAGCTTGTTCTTTTCGGGAATATATCTATTATAGTAGAGGCAGGCAAAATCAGT 110343 | ||| | | ||| || || ||| | | || | || ||||||||||| Sbjct 1418335 C--ATG-GGATGGTTGCTTGCGCAAAT-----GAGAAAAGAGCAAACAAGCAAAATCAGT 1418386 Query 110344 GTGTAATCCTTCATCTCTAGAAATGAGTTCGTTGCTGTATGTCAAACCGGG 110394 ||| | |||||||| | |||||||| || ||||| | ||||| || || Sbjct 1418387 GTGAAGACCTTCATCACGGGAAATGAGCTCATTGCTAAAAGTCAAGCCTGG 1418437 >seq9 Length=614693 Score = 102 bits (112), Expect = 7e-17 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 25165 ATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGT 25224 |||| |||| ||||| | ||||| || || | || ||||| | ||||| | ||||| Sbjct 95212 ATTACACAA--TGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACATTGGAAGT 95269 Query 25225 CGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACC 25284 ||| | ||| |||| || | || || ||||| || || || || || || || Sbjct 95270 AGAATCATCTGATTCTATTGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATTCC 95329 Query 25285 GCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAG 25344 || || |||||| | ||||||| || ||||||||||| ||||||| | | | | Sbjct 95330 TCCGGACCAGCAACGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGTCGTACACTTTC 95389 Query 25345 CGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||||||||||||||| || || || | ||||| ||| Sbjct 95390 CGATTACAATATTCAAAAGGAGTCGACTTTACATTTGGTG 95429 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || || | ||||| | ||||| ||| | | Sbjct 95448 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACACTTGAAGTGGAATCGTCC 95507 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||| |||| ||| | || || | || ||| || || || ||||| || || |||||| Sbjct 95508 GATTCTATTGAGAATGTCAAGAACAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 95567 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| || |||||||| || ||||| | | | | | |||||||| Sbjct 95568 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGACGGCCGTACTCTTTCTGATTACAAC 95627 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||||||||| | || || || ||| | ||| | || || Sbjct 95628 ATCCAAAAAGAATCCACGTTGCACTTGGTATTACGCTTGCGTGGCGG 95674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445093988287680