Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq9 131 2e-25 seq4 131 2e-25 seq1 116 4e-21 seq34 102 8e-17 seq12 84.2 2e-11 >seq9 Length=614693 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 || || || | ||| | ||||||||| ||||| |||||||| || || || | | Sbjct 95662 CGTAATACCAAGTGCAACGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCG 95603 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||||||||| || ||||||||||| |||||||| || || || ||||| || Sbjct 95602 TCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTG 95543 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||| || | ||||| || | | |||||||||||||| || || || || Sbjct 95542 TCTTGAATCTTGTTCTTGACATTCTCAATAGAATCGGACGATTCCACTTCAAGTGTGATA 95483 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || | ||| || || || |||||||| Sbjct 95482 GTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 95448 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 |||| || || ||||||||||| ||||| ||| || || || || || || ||| Sbjct 95422 TGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCTTCAAGTTGT 95363 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || ||||| | ||| ||||| || || || || ||||| || || || || ||| Sbjct 95362 TTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTT 95303 Query 134631 TGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || |||| || | |||| | || || ||||| || || | || ||||| || || || Sbjct 95302 TGCTTGA-CGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTCTTTCCAGT 95244 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTGT 134718 | ||| || || || ||||||||| ||| Sbjct 95243 GAGAGTCTTGACAAAGATTTGCATTGTGT 95215 >seq4 Length=1091430 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||||||||||||| || ||||| |||||||| ||||||||||| | Sbjct 754169 CCGCCACGGAGACGCAACACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAA 754110 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || || || ||||| || ||||| | ||| |||||||| || || Sbjct 754109 AGAGTACGACCATCTTCAAGTTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGTGGG 754050 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || | ||||| || | | || || ||||| || Sbjct 754049 ATACCTTCCTTATCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGATTCAACT 753990 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| ||||| || || || ||||| || || || |||||||| Sbjct 753989 TCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753943 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || || | ||| | ||| || || ||||||||||| ||||||||||| | ||| | | Sbjct 753932 AGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 753873 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || || |||||||||||||| |||||||| ||||| || || || || ||||| Sbjct 753872 CCA-TCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTC 753814 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| || || | ||||| || | | || || || || || || | ||| Sbjct 753813 CTTGTCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGT 753754 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||| || || || ||||| || || || |||||||| Sbjct 753753 AATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 Score = 113 bits (124), Expect = 5e-20 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || || | ||| | ||| || ||||| |||||||| |||||||| || | ||| | | | Sbjct 753476 AGACGAAGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAG-TACG 753418 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || || |||||||||||||| |||||||| ||||| || || || |||||||| Sbjct 753417 ACCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTC 753358 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAG 134673 || ||||| || || | |||| || | |||| | || || || || || || | || Sbjct 753357 CTTATCTTGGATCTTGTTCTTGA-CGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAG 753299 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| | || || || || |||||||| Sbjct 753298 TGATAGTCTTGCCGGTAAGTGTCTTGACAAAGATTTGCAT 753259 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || || | ||| | ||| || || ||||||||||| |||||||| || | ||| || | Sbjct 753704 AGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGACAA-AGTACG 753646 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| |||||| | ||| ||||| || || || || ||||| Sbjct 753645 GCCATCTTCAAGTTGCTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAGGAATACCTTC 753586 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAG 134673 || ||||| || || | | | | || | |||| | || || ||||| || || | || Sbjct 753585 CTTATCTTGGATCTTAT-TCTTAACGTTTTCAATAGAATCAGAGGATTCAACTTCCAAAG 753527 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || || || ||||| || || || |||||||| Sbjct 753526 TGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753487 >seq1 Length=3088551 Score = 116 bits (128), Expect = 4e-21 Identities = 155/210 (74%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568 ||| || || || |||||||||||||||||||| | ||| | | || || || || | Sbjct 605768 GTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAG-TACGACCATCTTCAAGTT 605710 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 ||||||||||||| || | ||| |||||||| || || |||||||| || |||||||| | Sbjct 605709 GTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATCT 605650 Query 134629 TTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 | | |||| || | |||| | || || || ||||| || | || || || || || Sbjct 605649 TGTTCTTGA-CGTTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTCTTGCCA 605591 Query 134688 GTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | || || ||||| |||||||| ||| Sbjct 605590 GTAAGGGTCTTGACGAAGATTTGCATGTTG 605561 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || ||||| || |||||||||||||| || |||||||| | ||| | | || || || Sbjct 606457 ACAAGGTGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGACAAAG-TACGACCATCCTC 606399 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 || |||||||||||||| ||||| || ||||| || || || |||||||| || ||||| Sbjct 606398 AAGTTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTG 606339 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || | ||||| || | | || || || || || || | ||| || || || Sbjct 606338 GATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTT 606279 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || || || || ||||| Sbjct 606278 GCCAGTCAAAGTCTTGACAAAGATCTGCAT 606249 Score = 100 bits (110), Expect = 3e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568 ||| || || ||||||||||| || |||||||| | ||| | | || || || || | Sbjct 605996 GTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAG-TACGACCATCTTCAAGTT 605938 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 ||||||||||||| || | ||||||||| || || || |||||||| || || || || | Sbjct 605937 GTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGGATCT 605878 Query 134629 TTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 | | |||| || | |||| | || || || || || || | ||| || || || || Sbjct 605877 TGTTCTTGA-CGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCA 605819 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || || ||||| Sbjct 605818 GTCAAAGTCTTGACAAAGATCTGCAT 605793 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568 ||| || || || ||||||||||||||||| || | ||| || || || ||||| | Sbjct 606224 GTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAA-AGTACGACCATCTTCGAGTT 606166 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 | || |||||||| ||||| || ||||| || || || |||||||| || ||||| || | Sbjct 606165 GCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCT 606106 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | | ||||| || | | || || || || || || | ||| || || || || | Sbjct 606105 TGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAG 606046 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || || || || ||||| Sbjct 606045 TCAAAGTCTTGACAAAGATCTGCAT 606021 >seq34 Length=2204315 Score = 102 bits (112), Expect = 8e-17 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568 ||| || ||||| |||||||| ||||||||||| | ||| | | || || || || | Sbjct 1854144 GTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAG-TACGACCATCTTCAAGTT 1854086 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 | ||||| || ||||||||||| ||||| || || || |||||||| || |||||||| | Sbjct 1854085 GCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGAATCT 1854026 Query 134629 TTTGTTTGAC 134638 |||| ||||| Sbjct 1854025 TTTGCTTGAC 1854016 >seq12 Length=2893134 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568 ||| || || || |||||||| || |||||||| | ||| | | || || ||||| | Sbjct 1461590 GTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGACAAAG-TACGACCATCCTCGAGTT 1461532 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 | ||||| || ||||||||||| ||||| || || || || || || || ||||| || | Sbjct 1461531 GCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCTTGGATCT 1461472 Query 134629 TTTGTTTGAC 134638 |||| ||||| Sbjct 1461471 TTTGCTTGAC 1461462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397932506480