Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq74 123 4e-23 seq24 111 2e-19 >seq74 Length=1162362 Score = 123 bits (136), Expect = 4e-23 Identities = 517/807 (64%), Gaps = 18/807 (2%) Strand=Plus/Plus Query 161111 CACTACGGGGATTTGACTGACTC--CCTGAACATAGTCTCTATCATTAAGGAAGTAGAAC 161168 ||||| || ||||||||||| || | || | | ||| ||||||| | | ||| Sbjct 830168 CACTATGGTGATTTGACTGATTCAACTTG--CCTTGTCCATATCATTGCTCAGATCCAAC 830225 Query 161169 CTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTG 161228 | ||| |||||||| | | || || ||| || || || ||||| || ||| Sbjct 830226 CCACTGAAGTCTACAACTTGGCTGCTCAATCTCACGTCAAGGTCTCTTTTGATATGTCTG 830285 Query 161229 AATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGT-CTC 161287 |||| || | | |||||||| || || | | | ||||| || |||| || Sbjct 830286 AATACACTGGTGATGTGGATGCTCTTGGTACTTTGCGTCTTTTGGATGCTATTCGCACTT 830345 Query 161288 CTAGGTATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTG 161347 | | | || |||| | || ||| ||||||| || || || ||||||||||| Sbjct 830346 GTGGAT-TGCAAGATCGTGTTCGTTTCTACCAAGCTTCTACTTCCGAGTTGTATGGTAAA 830404 Query 161348 GTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTA 161407 || || || ||||| || ||||| || |||||||| || || || || ||||| || Sbjct 830405 GTGGTTGAAACTCCACAAAAGGAAACCACTCCTTTCTATCCTCGTTCACCCTATGGTGTT 830464 Query 161408 GCTAAACTCTATGGATATTGGAT---TGTAAAGAACTACAGAGAGAGTTATGGGATGCAC 161464 || || | ||||| || ||||| ||| ||||| | || |||| ||| | Sbjct 830465 GCCAAGTTATATGGTTACTGGATCACTGT---CAACTATCGTGAATCCTATGATATGTAT 830521 Query 161465 GCCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACC 161524 || | | ||||||||| ||||| || || || ||||| || || ||||| || || Sbjct 830522 GCATGCAATGGTATTCTCTTCAATCACGAATCTCCACGCCGTGGCCGTACTTTTGTGACA 830581 Query 161525 CGTAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTA 161584 | ||||| ||| | | | | ||| | |||| || || ||| | || || Sbjct 830582 AGAAAGATCACTCGTGCTGTTGCTGATATCCATTTGGGACGTCAAGAATGTTTGTATCTT 830641 Query 161585 GGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGG 161644 ||||| | | | | || ||||||||||||||| |||||||| || | |||||| Sbjct 830642 GGTAACATTGATGCCAAGCGTGATTGGGGTCATGCTCGTGACTATGTCGAAGGCATGTGG 830701 Query 161645 TTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGTAAAGAGTATTCA 161704 | ||| | ||||| || | ||||| |||| ||| | ||||| ||| || | | Sbjct 830702 CTCATGCTTCAACAAGACAAGCCTGAAGACTTTGTTTTGGCCACTGGTGAAACTCACACT 830761 Query 161705 GTGAAGGACTTTGT---AGAGGCATCTGCTGAATACTTTGGTATGAAGATTGAGTGGCAG 161761 ||| |||||| | |||| | ||||| ||| ||| ||||||| ||| | Sbjct 830762 GTGCGCAGCTTTGTTGAAAAGGCTTTTGCTG-TTAC--TGGACGCAAGATTGTTTGGGAA 830818 Query 161762 GGTGAAGGATTGGATGAAGTGGGTATAGATAGATTTACAAAGAAGGTTGTCGTTCGTGTG 161821 |||||||| | ||||| | || | ||| || ||||| |||||| | Sbjct 830819 GGTGAAGGTGTCAATGAAATTGGCAAGGATGCTGAAACTGGAAAGGTCCGTGTTCGTATT 830878 Query 161822 AGTGACAAATACTTCAGACCAGCAGAGGTTGAAACTCTCTGGGGTGATCCCACTAAGGCT 161881 | ||| |||||| | || || || |||||| | | |||||||| | ||||| Sbjct 830879 GATCCCAAGTACTTCCGCCCTGCCGAAGTTGAACTTTTGCTCGGTGATCCTGCCAAGGCC 830938 Query 161882 AAAGAGGTATTGGGTTGGAAACCTAAG 161908 || || | | |||||||| | |||| Sbjct 830939 AATGAACAACTTGGTTGGAAGCGTAAG 830965 >seq24 Length=199139 Score = 111 bits (122), Expect = 2e-19 Identities = 402/622 (65%), Gaps = 18/622 (3%) Strand=Plus/Minus Query 161306 GTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAG 161365 || ||| ||||||| || || || ||||||||||| || || || ||||| Sbjct 184018 GTTCGTTTCTACCAAGCTTCTACTTCCGAGTTGTATGGTAAAGTGGTTGAAACTCCACAA 183959 Query 161366 AAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATAT 161425 || ||||| || |||||||| || || || || ||||| || || || | ||||| || Sbjct 183958 AAGGAAACCACTCCTTTCTATCCTCGTTCACCCTATGGTGTTGCCAAGTTATATGGTTAC 183899 Query 161426 TGGAT---TGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTA 161482 ||||| ||| ||||| | || |||| ||| | || | | |||||| || Sbjct 183898 TGGATCACTGT---CAACTATCGTGAATCCTATGACATGTATGCATGCAATGGTATCCTC 183842 Query 161483 TTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGA 161542 ||||| || || || ||||| || || ||||| || || | ||||||||| | | Sbjct 183841 TTCAATCACGAATCTCCACGCCGTGGCCGTACTTTTGTGACAAGAAAGATTACTCGTGCT 183782 Query 161543 CTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGA 161602 | | ||| | |||| || || ||| | || || ||||| | | | | Sbjct 183781 GTTGCTGATATCCATTTGGGACGTCAAGAATGTTTGTATCTTGGTAACATTGATGCCAAG 183722 Query 161603 CGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAA 161662 || |||||||| ||||| || ||||| || | |||||| | ||| | ||||| || Sbjct 183721 CGTGATTGGGGACATGCACGTGATTATGTCGAAGGCATGTGGCTCATGCTTCAACAAGAC 183662 Query 161663 ACTCCTGATGACTATGTGATTGCCACAGGTAAAGAGTATTCAGTGAAGGACTTTGT---A 161719 | ||||| |||| ||| | ||||| ||| || || | ||| |||||| | Sbjct 183661 AAGCCTGAAGACTTTGTTTTGGCCACTGGTGAAACTCATACTGTGCGCAGCTTTGTTGAA 183602 Query 161720 GAGGCATCTGCTGAATACTTTGGTATGAAGATTGAGTGGCAGGGTGAAGGATTGGATGAA 161779 |||| | ||||| ||| ||| ||||||| ||| | |||||||| | ||||| Sbjct 183601 AAGGCTTTTGCTG-TTAC--TGGACGCAAGATTGTCTGGGAAGGTGAAGGTGTCAATGAA 183545 Query 161780 GTGGGTATAGATAGATTTACAAAGAAGGTTGTCGTTCGTGTGAGTGA--CAAA-TACTTC 161836 || || | || || ||||| ||||||| | ||| |||| || ||| Sbjct 183544 GTTGGCAAGGACGCTGAAACTGGCAAGGTGCGCGTTCGT---ATTGATCCAAAGTATTTC 183488 Query 161837 AGACCAGCAGAGGTTGAAACTCTCTGGGGTGATCCCACTAAGGCTAAAGAGGTATTGGGT 161896 | || || || |||||| | | |||||||| | |||||||| || | | || Sbjct 183487 CGCCCTGCCGAAGTTGAACTTTTGCTTGGTGATCCTGCAAAGGCTAATGAAATTCTCGGC 183428 Query 161897 TGGAAACCTAAGCATACCTTTG 161918 ||||| | |||| || ||||| Sbjct 183427 TGGAAGCGTAAGGTTAGCTTTG 183406 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 160976 GGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAGAAGGGGTATGAA 161035 ||| | ||||| || ||||| ||||||||| | || || | || | ||||| |||||| Sbjct 184421 GGTGTTACTGGTCAAGATGGTTCCTATCTTACCGAGTTTTTGCTCGACAAGGGCTATGAA 184362 Query 161036 GTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATCGATCATATCT 161093 ||||||||||| || || ||| |||| || || || || || | ||||| ||||||| Sbjct 184361 GTCCATGGTATCATCCGCAGATCCTCTTCTTTCAACACTGGTCGTATCGAACATATCT 184304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729928924815120