Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq45 161 8e-35 seq2 140 3e-28 seq17 102 6e-17 >seq45 Length=1879501 Score = 161 bits (178), Expect = 8e-35 Identities = 333/486 (69%), Gaps = 11/486 (2%) Strand=Plus/Minus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTC 44137 ||||| ||||||||| | || ||||| || |||| ||| |||| ||||| ||||| Sbjct 1418575 AAAGCTGACTGGGCCTTCAAGTGGATTTCATCCAATGGTTCCTTTGCTGAACGTCTTGTT 1418516 Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTA 44197 || ||||| | ||| |||||||| |||||||| || || ||||| |||| |||||| | Sbjct 1418515 GCTTTTGCTGCTGTAGAAGGCATCTTCTTTTCTGGCTCTTTTGCTTCCATCTTTTGGCTC 1418456 Query 44198 AAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAA 44257 |||||||| ||| | ||||| || ||||| ||| |||||| | || ||||||||| Sbjct 1418455 AAGAAACGTGGTCTTATGCCAGGCTTGACTTTTAGCAATGAGCTCATTTCCCGTGATGAA 1418396 Query 44258 GG-CTT-ACATTGCGATTTTGCTTGCTTGTTACTTGGATATCT-AGGAGACGATAAGCCT 44314 || ||| ||| || |||||||||| ||| | || || | | | | | | || Sbjct 1418395 GGTCTTCACACTG--ATTTTGCTTGTTTGCTCTTTTCTCATTTGCGCAAGCAACCATCC- 1418339 Query 44315 TCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATG 44374 |||| | | ||| | ||| |||| || || || || ||||||||||| || Sbjct 1418338 -CATGAACG--TATTCTTGGTATCATTGTTGAAGCTGTTGCTATTGAACAAGAATTCTTG 1418282 Query 44375 ACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATT 44434 || || | || || | || || ||||||| | ||| ||||| ||| Sbjct 1418281 ACTGATGCTCTTCCCGTGTCCCTGATTGGTATGAATGCCAAGCTCATGTGTCAATACATT 1418222 Query 44435 GAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTG-TACA 44493 |||| |||| ||||| || ||| | | ||||| | | || || || | || ||| Sbjct 1418221 GAATTTGTTGCCGATCGCTTGCTTGTCGCCTTGGGTCTCAACAAGCATTACAATGCTAC- 1418163 Query 44494 AAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAA 44553 || || ||||| |||||||| | || || | |||||||||| |||||||| ||||| Sbjct 1418162 CAATCCATTTGACTTTATGGACATGATCTCTCTTCAAGGCAAAACCAACTTTTTCGAAAA 1418103 Query 44554 ACGCGT 44559 || || Sbjct 1418102 GCGTGT 1418097 >seq2 Length=1153633 Score = 140 bits (154), Expect = 3e-28 Identities = 343/517 (66%), Gaps = 5/517 (1%) Strand=Plus/Plus Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC 44118 ||||||| || || | || ||||| ||||| || |||||| ||| |||| || Sbjct 770335 AGTACCTTGTATCAAGAAGAAGGCAGAATGGGCATTTCGATGGATCTCTTCCAATGGATC 770394 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 ||||| ||||| || || || || || | ||||||||||| |||||||| || || || Sbjct 770395 TTTTGCTGAACGTCTAGTTGCATTCGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTT 770454 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 ||| | || |||||| | || || || || |||||||| || | || || || || Sbjct 770455 TGCTTCTATCTTTTGGCTCAAAAAGCGTGGATTGATGCCAGGTCTTACATTCAGTAACGA 770514 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCT 44298 | | || ||||||||||| |||||| ||||||||| || | || || |||| Sbjct 770515 GCTTATTTCACGTGATGAAGGATTACATACCGATTTTGCATGTCTCTTGTTTTCTCATCT 770574 Query 44299 AGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGAT 44358 | || |||| || | | || ||||| || | || || || || || Sbjct 770575 TCG---TCATCAGCCATCTCATCAACGTATCCGTGATATCATTATTGAAGCTGTTAATAT 770631 Query 44359 AGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTT 44418 || |||||||| | ||| || |||||||| ||| || || ||||||| | Sbjct 770632 CGAGCAAGAATTCTTAACAGATGCTTTACCTGTTTCTTTGATTGGTATGAATGCCAAGCT 770691 Query 44419 GATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAA 44478 ||| || || ||||||| | || |||||| | | ||| || || || || Sbjct 770692 CATGTGTCAGTACATTGAATTTGTGGCGGATCGTCTTTTGGTGGCTCTTGGCGTAGACAA 770751 Query 44479 ACACTAT-ATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAA 44537 || ||| ||| || || ||| ||||| |||||||| | ||||| | | ||||| | Sbjct 770752 GCATTATCATTCAACCAATCCC-TTTGACTTTATGGACATGATTTCTCTTCAGGGCAAGA 770810 Query 44538 CAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCG 44574 | ||||| ||||| || || || ||| ||||| || Sbjct 770811 CCAACTTCTTTGAGAAGCGAGTGTCAGATTATCAACG 770847 >seq17 Length=338404 Score = 102 bits (112), Expect = 6e-17 Identities = 222/331 (67%), Gaps = 1/331 (0%) Strand=Plus/Minus Query 41101 AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACA 41160 |||| || ||| | ||||||| |||||| | || ||||| || || || || || |||| Sbjct 309044 AACTTTCCTGTGCAATGTATCAGAGATCATGCGATATGGGTCTTGGTGTTCCATTCAACA 308985 Query 41161 TAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTG 41220 | || ||||||||| | || |||||||| || || || |||| ||||||| | Sbjct 308984 TTGCATCTTATGCTCTCTTGACAAGGATGATTGCTCATGTCACTGATTTGGAACCTGGAG 308925 Query 41221 AATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAG 41280 |||| ||||| | | ||||| ||| | ||| || | || || || | ||| | Sbjct 308924 AATTCATTCACGTGATGGGAGACACGCATGTATACGTTGACCATATCGATGCTCTAAAAC 308865 Query 41281 AACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAA 41340 | ||||| ||| |||| | |||||||| | ||| ||| |||| | || Sbjct 308864 AGCAACTTGAACGCGAACCACGTCCATTTCCTAAGCTCAAGATTGCACGCAAGATCGATT 308805 Query 41341 ACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAA 41400 ||||||||||||| | | ||||| |||| || ||||| |||| | |||| Sbjct 308804 CCATTGATGATTTTAGAGTAGATGACTTTGAAGTAGTAGATTATCATCCTCATGGCAAAA 308745 Query 41401 TCCACATGGACATGTCTGTATGATAATTGAT 41431 | | ||| ||||||| |||| | |||| || Sbjct 308744 TTGATATGAACATGTCAGTAT-AAAATTCAT 308715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455641544370