Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq9 123 2e-23 seq12 118 9e-22 seq73 114 1e-20 seq1 113 4e-20 seq4 105 6e-18 >seq9 Length=614693 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| || |||||||| || ||||| || |||||||| || ||||| || Sbjct 95674 CCGCCACGCAAGCGTAATACCAAGTGCAACGTGGATTCTTTTTGGATGTTGTAATCAGAA 95615 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| |||||||| || ||| |||| | ||| || ||||| || || Sbjct 95614 AGAGTACGGCCGTCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGGA 95555 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || |||||||| || | | || | || || | | ||| ||| Sbjct 95554 ATACCTTCCTTGTCTTGAATCTTGTTCTTGACATTCTCAATAGAATCGGACGATTCCACT 95495 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||| ||||| || ||||| || ||||||||||||||| Sbjct 95494 TCAAGTGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCATA 95447 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || || || | ||||||||||| || || || |||||||||||||| ||| Sbjct 95446 CCACCACGTAAGCGAAGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAA 95387 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| || ||||| || ||| |||||||||| || || ||||| || Sbjct 95386 AGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGA 95327 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| | || | | |||| | || || | | ||| ||| Sbjct 95326 ATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACT 95267 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || || || ||||| || |||||||||||||| Sbjct 95266 TCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 95220 >seq12 Length=2893134 Score = 118 bits (130), Expect = 9e-22 Identities = 399/609 (66%), Gaps = 17/609 (3%) Strand=Plus/Plus Query 131645 TCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT 131704 ||||| || | ||| ||||| || || | ||| || || || |||| ||| | || Sbjct 1078156 TCAACACGTTGCATGAACAAGTCTGGAATCCACAAGGCATAAAACAAATCACGTGCACGA 1078215 Query 131705 TTCTCTTCTGTACCCATAAtttttttC-AAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 || |||||| | || || || || |||| |||||||| || | || | |||||| Sbjct 1078216 TTTTCTTCTTTGCC-ATGGTTCTTGCGTAAATCCAAAAAGTCAAAGACATCAGGATGCCA 1078274 Query 131764 GGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACG 131820 ||||| | ||| | || | ||| || ||||| ||| ||||||| |||| || Sbjct 1078275 TGGTTCAAGATAGATGGCAAATGCACCAGGTCGCTTGTTACCACCTTGATCCACATAGCG 1078334 Query 131821 AACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCT 131880 | | | ||||||||||| || | ||||||| | | || |||| | |||||||| | Sbjct 1078335 AGCAGTATTGTTGTATACACGTAGCATGGGCACAATGCCATTGGAATAGCCATTGGTACC 1078394 Query 131881 CTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGT 131939 ||| || |||| || | || ||||| | || || |||||||| || ||||| Sbjct 1078395 AGCAATATATGAGCCAGATGCACGAATGTTGTGGATATTAAGACCAATACCACCTGCCGT 1078454 Query 131940 ATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC-CGCG 131998 ||| || || | | ||| | | || || | |||||| ||||| | | ||| | Sbjct 1078455 CTTT-GAAATCTGGGAGCAAATCTTGAGTGTCTCATAGATGCCTTCAATGGAGTCTTCCT 1078513 Query 131999 GCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGC--TGAAAACA 132056 || ||| || || || || || || || ||| | || ||||||||| ||||| | Sbjct 1078514 TCATAGTCAAC-AAGAAACATGATGATAATTGTGGACGAGGTGTGCCGGCATTGAAA--A 1078570 Query 132057 ATGTGGGGCTGGCGTGTGTAAAAAGTTTTTTGGCCATGCACCGATACGATTGTATAGCGG 132116 ||| || ||||| ||||| ||| | || ||| | || | || || || | Sbjct 1078571 GTGTTGGACTGGCATGTGTGAAATAGCGCTCGGACATCAAGTTGTAAGTTTCAATGGCAG 1078630 Query 132117 ACTCGATATCGCCCAGATGTATGGTCAATGCGACCCGCATGTACATGTGTTGAATGCGCT 132176 || || || | ||| || | ||| || ||||| |||||||||| || | Sbjct 1078631 CATCAATGTCTTCACCATGAATACCAACTGCAACACGCATCAACATGTGTTGTGGACGTT 1078690 Query 132177 CGGCCGTTTTGCCGTCGATTTTGATCAAATA--ACCGTTTTCCAAAGTTTTGAAACCAAA 132234 | || | ||||| | ||| |||| |||||| | || ||||| || ||||||||||| Sbjct 1078691 CTGCAATCTTGCCATTGATCTTGAGCAAATAGGAACG--CTCCAATGTCTTGAAACCAAA 1078748 Query 132235 ATATTTGTA 132243 | | ||||| Sbjct 1078749 AAAGTTGTA 1078757 Score = 113 bits (124), Expect = 4e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 130760 ATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAG 130819 ||||| || |||||||| | || |||| | || | ||| ||| | ||||||||| Sbjct 1077218 ATTTGGAATTCACCAGCAATCACACGTCGAGTATACAAATTGGATGTGTAAGGTTCAAAG 1077277 Query 130820 GATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGA 130879 |||||||| ||| | ||||||| |||| ||| || ||||| ||||| || || Sbjct 1077278 CATTCGTTGAAGCCAAGGATTTGTGAAGTAGATGCTGTAGGCATAGGCGCCACCAAGAGT 1077337 Query 130880 GAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGA 130936 |||||||||||||| | | | | || ||| ||||||||||| |||||||||| ||| Sbjct 1077338 GAATTACGAAGACCATTCTTTGCAATCTTTTGCTTCAATTCAGCCCAATCCCAAAGA 1077394 >seq73 Length=1220876 Score = 114 bits (126), Expect = 1e-20 Identities = 388/594 (65%), Gaps = 13/594 (2%) Strand=Plus/Minus Query 131656 CATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGT 131715 |||||||| || || | ||| || || || |||| ||| | || |||||||| | Sbjct 414744 CATAAACATGTCTGGAATCCACAAGGCATAAAACAAATCACGTGCACGATTCTCTTCCTT 414685 Query 131716 ACCCATAAttttttt-CAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAAT 131774 || || || || ||||| |||||||| || | || | |||||| |||||||||| Sbjct 414684 GCC-ATGGTTCTTGCGCAAATCCAAAAAGTCAAACACATCAGGATGCCATGGTTCCAAAT 414626 Query 131775 ACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGT 131831 ||| || | ||| || ||| ||||| ||||||| |||| |||| | | |||| Sbjct 414625 ACATGGCAAATGCACCAGGTCGCTTGTTACCACCTTGATCCACATAACGAGCTGTATTGT 414566 Query 131832 TGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGC 131891 || | || || |||||||| | | ||||||| | ||||||||| | |||||| Sbjct 414565 TGAACACACGTAACATGGGAACAATGCCGTTGGAATATCCATTGGTACCAGCAATGTAAG 414506 Query 131892 TGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATT 131950 ||| | || | || ||||| | || || |||||||| || || || || || || Sbjct 414505 ATCCAGTAGCACGAATGTTGTGGATATTAAGACCAATACCACCTGCTGT-CTTGGAAATC 414447 Query 131951 AGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC-CGCGGCAATGTCGAC 132009 || || | |||| || | ||| || ||||| | || | || ||| || Sbjct 414446 TTGGCACAGGTCTTTAGTGTCTCATAAATGCCTTCAATTGAATCATCCTTCATGGTCAAC 414387 Query 132010 TAAAAAGCAAGAGGACAACTGTTG--GTGAAATGTGCCGGCTGAAAACAATGTGGGGCTG 132067 || ||||| || |||| |||| | ||| | || || || ||||| || || ||| Sbjct 414386 -AAGAAGCAGGAAGACAGCTGTGGACGTGGA--GTACCAGCATTGAACAAGGTAGGACTG 414330 Query 132068 GCGTGTGTAAAAAGTTTTTTGGCCATGCACCGATACGATTGTATAGCGGACTCGATATCG 132127 | |||||||| | | | ||| | | || | | ||||| || |||||||| Sbjct 414329 CCATGTGTAAAGAAACGCTCCGACATCAAGTGGTAAGTCTCAATAGCAGAATCGATATCT 414270 Query 132128 CCCAGATGTATGGTCAATGCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCGTTTTG 132187 | ||| || | || || ||||| ||| |||||| || || || |||||| Sbjct 414269 TCACCATGGATACCAACAGCAACACGCATAATCATATGTTGAGGACGTTCAGCTGTTTTG 414210 Query 132188 CCGTCGATTTTGATCAAATAACCGTTTTCCAAAGTTTTGAAACCAAAATATTTG 132241 || | ||| |||| ||||||| ||||| || ||||| || ||| | ||| Sbjct 414209 CCATTGATCTTGAGCAAATAAGAACGCTCCAATGTCTTGAAGCCGAAAAAGTTG 414156 >seq1 Length=3088551 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || ||||| ||||||||||| || | || | ||||| Sbjct 606001 ACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCTTCA 605942 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| || || | ||||||||||| || || || || | || || ||||| | Sbjct 605941 AGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGG 605882 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||||| || | | |||| | || || | | |||||||| | ||| |||| ||| Sbjct 605881 ATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTG 605822 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||| || |||||||| |||||| Sbjct 605821 CCAGTCAAAGTCTTGACAAAGATCTGCATA 605792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| |||||||| || | || | ||||| Sbjct 605773 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCATCTTCA 605714 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| || || | |||||||| || ||||| || || | || || || || Sbjct 605713 AGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGA 605654 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||||| || | | |||| | | || | || || || || | || || |||| || Sbjct 605653 ATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAAG-GTGATAGTCTT 605595 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || || || ||||||||||| Sbjct 605594 GCCAGTAAGGGTCTTGACGAAGATTTGCAT 605565 >seq4 Length=1091430 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || | || | || || || ||||| || |||||||| | | || | Sbjct 754157 CGCAACACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCA 754098 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || || ||| |||||||||| || ||||| || || | ||| || ||| Sbjct 754097 TCTTCAAGTTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATACCTTCCTTA 754038 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||||| || | |||| | || || | | ||||||||| | ||| || Sbjct 754037 TCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGATTCAACTTCCAAAGTGATG 753978 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||| |||| ||| || ||||||||||||||| Sbjct 753977 GTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 753942 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || ||||| || ||||| || || | || | ||||| Sbjct 753695 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTCA 753636 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || || |||||||||| || || || || || | ||| || ||||| | Sbjct 753635 AGTTGCTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTATCTTGG 753576 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || || | | |||| | || || | || ||||||||| | ||| || | ||| Sbjct 753575 ATCTTATTCTTAACGTTTTCAATAGAATCAGAGGATTCAACTTCCAAAGTGATGGTCTTG 753516 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||| || ||||||||||||||| Sbjct 753515 CCAGTCAAAGTCTTGACAAAGATTTGCATA 753486 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || ||||| || |||||||| || | || | ||||| Sbjct 753923 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCA 753864 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| || || | || | ||| || || || || || | ||| || || || | Sbjct 753863 AGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGG 753804 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||||| || | |||| | || || | | |||||||| | ||| || | ||| Sbjct 753803 ATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTCTTG 753744 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||| || ||||||||||||||| Sbjct 753743 CCAGTCAAAGTCTTGACAAAGATTTGCATA 753714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934016762288