Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq73 233 2e-56 seq12 159 4e-34 >seq73 Length=1220876 Score = 233 bits (258), Expect = 2e-56 Identities = 1116/1749 (64%), Gaps = 51/1749 (3%) Strand=Plus/Minus Query 110359 TGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGA 110418 ||||| | ||||||||| ||||||||||| || | ||||||| | || | |||||| Sbjct 415965 TGATCTCAAATAGTACATGCCGGTCTTGAGCCCCTTTTTCCATCCATAAAAGTGCATACT 415906 Query 110419 AGAGAGCTTGGACATCGTTGGACTTTCCA-TGAAGAGGTTCATACTTTGACTTTGGTCAA 110477 | ||||||| || ||||| | ||| |||||| |||| ||||||||| || |||| Sbjct 415905 TGTGAGCTTGC-CAAAGTTGGGTTCGCCAATGAAGATATTCAAACTTTGACTCTGATCAA 415847 Query 110478 TGAAGCGCCCCCGTTGTGCCGCCATATCAATGACATC-CTTCATCTTAATTTCCCAAACT 110536 | ||| || || | || ||||||||||||| | | | | || || ||||||| Sbjct 415846 TAAAGGCACCACGATCAGCAGCCATATCAATGATGACACGTTGTGGTAGTT-CCCAAACA 415788 Query 110537 GTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCC 110596 || || |||||||| | |||||| || || | | | || || || || Sbjct 415787 GTCTTGTAAAGATTCTTCAAATCATCAGGAATGATAGGCACACGTTGAATAGAGCCGTTG 415728 Query 110597 GCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTG 110656 | || || | || ||| | ||| | | ||||| |||| | | | || || Sbjct 415727 TCTGACATGATCATATTCTTGACATCATCGTTCCAGATACCACGTTCCACCAAATCCTTC 415668 Query 110657 ACGAGGTGCTTG--TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGT 110714 | | | || |||||||| || ||||| || | | | | || | || Sbjct 415667 AACAAC--CATGGATTGACAATTTGGAATTCACCAGCCAAGACACGACGTGTATACAAGT 415610 Query 110715 TTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTG 110774 | | |||||| |||||||||||||| || ||| | ||| |||| ||||| || || | Sbjct 415609 TGGATGTGTAAGGTTCAAAGCATTCGTTGAAACCAAGGATCTGTGATGTGGATGCAGTAG 415550 Query 110775 GCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT--CCTTGAG 110832 |||| || || | |||||| || || | ||| | || | | | | || ||||||| Sbjct 415549 GCATAGGAGCTACCAAAAGTGAATTGCGTAAACCATGCT--TGGCTACTTTTTCCTTGAG 415492 Query 110833 AACATCCCAGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG-AAGCAC 110889 | | ||| || || | || | ||| |||| |||||| |||| | || || Sbjct 415491 CAAAGTCCAATCCCATAAATCAG-TAGGTGTCACAC-CCCACAAGTCATATTGCAATTGA 415434 Query 110890 CCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC 110949 ||||||| | || |||||||| | || || ||||| | ||| | | |||||||||| Sbjct 415433 CCCTTGG-ATGCAGGAGAACCTTGGAAAGTCTCATAAGCACCATCACGTGCAGCCAATTC 415375 Query 110950 ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTT 111009 | || |||| | || ||||| |||||||||||||| | ||| | | ||| Sbjct 415374 AGTCGATGCTTCCACAGCAGCATGATAAATGGTTTCAAAGATCTGCAAATTAAGTTGCTT 415315 Query 111010 GGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAAC 111069 ||||||| |||||||||| | | || ||| || || |||| || ||||||||||| Sbjct 415314 GGCTTCAGGCGAATCAAATGGGAAACGCATCAACATGAAAGCATCAGCAAGACCTTGAAC 415255 Query 111070 ACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATA 111126 ||| ||||||||||| | || || ||| || ||| ||| ||| || ||||| Sbjct 415254 ACCTAAACCAATAGGACGATGACGACGATTGGA---TCGTTCAGCTTCAGGCACAGGATA 415198 Query 111127 AAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAG 111186 | |||| ||||||||| ||| | ||| || || | ||| |||| | ||| | Sbjct 415197 ATAATTGATGTCAATGATCTTGTTCAAATTACACGTTACCACCTTGGTGACATTATGTAA 415138 Query 111187 TTTTTCATAATCAA---AAGTGCGAGTCTC---TTCATTG------ACATACTTTGGAAG 111234 |||| | | |||| ||| |||| || | ||| ||| | || | Sbjct 415137 CTTTTGAAAGTCAAAGGAAGCAGGAGTATCATGTGTCTTGCGCACCACAAAAGAAGGCAA 415078 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 || || |||| |||||| |||||| ||||| | | ||||| | |||||| Sbjct 415077 TGCAATACTGGCCAGATTGCATACAGCCACTTCATCAGGAGAAGAATACTCGACAATTTC 415018 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 ||| || | ||| | || || || ||||| || | || || || ||||| Sbjct 415017 TGTGCAAAGATTGCTGCATTTGATGGTACCCAAGTTTTGCTGATTGGATTTGCGATTGCA 414958 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 ||||||||||| | |||| | || || || || || |||| || | ||| || | Sbjct 414957 TGCATCCTTGTATAACATGAATGGACCACCAGTTTCTGTTTGTGCTTCCAAAATGGCATA 414898 Query 111415 CCAAA-CATCGGCGGCTGGTACA-ATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTG 111472 ||||| | | | || | || | ||| || || || || || || | | Sbjct 414897 CCAAAGTTTTTGTGCCTTGACCACCTTACGT--GCACGACCTTCACGTTCATATCTCAAG 414840 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAG 111532 || | | ||||| | |||||| | || | || ||||| | || |||||| Sbjct 414839 TATAATTCATCAAATGCATCACCCCATACATCTTGTAATCCAGGTGCTTCATCAGGACAG 414780 Query 111533 AAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 || ||| ||| | |||| ||| || || || ||| || | |||||||||||||| | Sbjct 414779 AAGAGACTCCAATCACCATTTTCTTCCACACGTCGCATAAACATGTCTGGAATCCACAAG 414720 Query 111593 GATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 | |||| | ||| | | || ||| |||||| | || ||||| || || || | Sbjct 414719 GCATAAAACAAATCACGTGCA-CGATTCTCTTCCTTGCCATGGTTCTTGCGCAAATCCAA 414661 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATA------GACTGCGATAGATCCCTT 111705 || || | | ||| | |||||||| || | ||| | ||| || || ||| Sbjct 414660 AAAGTCAAACACATCAGGATGCCATGGTTCCAAATACATGGCAAATGCACCAGGTCGCTT 414601 Query 111706 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | ||| |||||| ||||| || ||||| ||| || || || | ||| |||| Sbjct 414600 GTTA---CCACCTTGATCCACATAACGAGCTGTATTGTTGAACACACGTAACATGGGAAC 414544 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825 ||| || | || | ||||| || || ||| |||| | | || | | | || Sbjct 414543 AATGCCGTTGGAATATCCATTGGTACCAGCAATGTAAGATCCAGTAGCACGAATGTTGTG 414484 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 ||| | | |||||||| || || ||| || || | ||||| | | || || | Sbjct 414483 GATATTAAGACCAATACCACCTGCTGTCTTGGAAATCTTGGCACAGGTCTTTAGTGTCTC 414424 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 ||| || || | ||||| || ||||| ||| | | |||||| |||| ||| || Sbjct 414423 ATAAATGCCTTCAATTGAATCATCCTTCATGGTCAACAAGAAGCAGGAAGACAGCTGTGG 414364 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 112005 | ||| |||||||||||||| | ||| || | | || | || | || | ||||| Sbjct 414363 ACGTGGAGTACCAGCATTGAACAAGGTAGGACTGCCATGTGTAAAGAAACGCTCCGACAT 414304 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 | || ||| ||||| | ||||||| || ||||| || ||||| || | || || || Sbjct 414303 CAAGTGGTAAGTCTCAATAGCAGAATCGATATCTTCACCATGGATACCAACAGCAACACG 414244 Query 112066 CATGAACAT 112074 ||| | ||| Sbjct 414243 CATAATCAT 414235 >seq12 Length=2893134 Score = 159 bits (176), Expect = 4e-34 Identities = 540/825 (65%), Gaps = 36/825 (4%) Strand=Plus/Plus Query 110368 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTT 110427 ||||||||| || ||||| || |||| ||||| | || | ||||| || | ||| Sbjct 1076911 ATAGTACATGCCAGTCTTAAGACCTTTCTTCCAGCCATAAAAGTGCATGCTAGTCAACTT 1076970 Query 110428 GGACATCGTTGGACTTTCCA-TGAAGAGGTTCATACTTTGACTTTGGTCAATG-AAGCGC 110485 | || ||| | | ||| |||| | ||||| |||||||| || ||||| |||||| Sbjct 1076971 GC-CAAAGTTTGGTTCACCAATGAAAATGTTCAAGCTTTGACTCTGATCAATATAAGCGC 1077029 Query 110486 CCCCGTTGTGCCGCCATATCAATGACAT--CCTTCATCTTAATTTCCCAAACTGTGCGAT 110543 | | | | || ||||||||||||| | || | || ||||| || || | Sbjct 1077030 CACGATCG-GCTGCCATATCAATGATGGTACGTTGAGA--AAGCTCCCATACAGTCTTGT 1077086 Query 110544 AGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCA 110603 |||||||||||| || | |||||||| | ||| ||| || || || | || Sbjct 1077087 AGAGATTCTTGAGCTCCTGTGGGATATTGGGTATACGCTGAATCGAGCCATTATCTGACA 1077146 Query 110604 CCATGAGATCCTTCA---TATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660 || | || ||| | |||| || ||| ||||| || | | || || || | | Sbjct 1077147 TGATCATATTCTTGACATTATCATT---CCATAGACCCATTTCCACAAGATCCTTCAAAA 1077203 Query 110661 GGTGCTTG--TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGT 110718 | | || |||||||| || ||||| || | | || || | || | Sbjct 1077204 GC--CATGGATTGACAATTTGGAATTCACCAGCAATCACACGTCGAGTATACAAATTGGA 1077261 Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 110778 |||||| |||||||||||||| || || | |||||||| || || ||||| ||||| Sbjct 1077262 TGTGTAAGGTTCAAAGCATTCGTTGAAGCCAAGGATTTGTGAAGTAGATGCTGTAGGCAT 1077321 Query 110779 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG--ATGCGTTCCTTGAGAACA 110836 || |||| ||| || ||||||||||| |||| ||| || || ||| | || Sbjct 1077322 AGGCGCCACCAAGAGTGAATTACGAAGACCATTCT--TTGCAATCTTTTGCTTCAATTCA 1077379 Query 110837 TCCCAGTCGTAG----TTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCC 110892 |||| || | |||| ||| | || | |||| | ||| | ||||| || Sbjct 1077380 GCCCAATCCCAAAGATTTGA---TGGCGTAAC-TCCCCATAGATCATATTGAAGTTGTCC 1077435 Query 110893 TTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACA 110952 || ||| || || || || ||| | || ||||| | ||| | | |||| | ||| || Sbjct 1077436 TTTGGAAGCAGGTGATCCATCATATGTCTCATAAGTACCATCCACAGCAGCAAGTTCGCA 1077495 Query 110953 GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGC 111012 ||||||| | || ||||| || ||||||||||| | | ||| | || |||||| Sbjct 1077496 AGATGCCTCCAATGCAGCATGATAGATTGTTTCAAAGATTTGCGTATTGAGCTTCTTGGC 1077555 Query 111013 TTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACC 111072 ||| |||||| || | || || ||| ||||| ||||||| |||||||| ||||| Sbjct 1077556 TTCTGGTGAATCGAAAGGATAACGCATCAACATAAAAGCATCCGCCAGACCTTGTACACC 1077615 Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG---GGATAAAA 111129 | |||||| || | || || ||| || ||| ||| || ||| |||||| | Sbjct 1077616 AAGACCAATGGGACGATGACGGCGATTTGA---ACGCTCAGCTTCCACGACAGGATAATA 1077672 Query 111130 ATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 || | ||||||| ||| ||||| |||||||||| ||| || Sbjct 1077673 GTTGATATCAATGATCTTGTTGAGATTCTTGGTAACAACCTTGGT 1077717 Score = 150 bits (166), Expect = 2e-31 Identities = 374/561 (67%), Gaps = 15/561 (3%) Strand=Plus/Plus Query 111533 AAAAGAGAC--CATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 ||||||||| || | |||| ||||||||| || | |||||| | |||||||||||||| Sbjct 1078130 AAAAGAGACTCCAATCACCATTTTCCTCAACACGTTGCATGAACAAGTCTGGAATCCACA 1078189 Query 111591 GGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 || |||| | ||| | | || ||| ||||| | || ||||| ||||| || Sbjct 1078190 AGGCATAAAACAAATCACGTGCA-CGATTTTCTTCTTTGCCATGGTTCTTGCGTAAATCC 1078248 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAG------ACTGCGATAGATCCC 111703 | || || | || ||| | |||||||| ||||||||| | ||| || || | Sbjct 1078249 AAAAAGTCAAAGACATCAGGATGCCATGGTTCAAGATAGATGGCAAATGCACCAGGTCGC 1078308 Query 111704 TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 || | ||| |||||| |||||||| || || ||| |||| || ||||| || Sbjct 1078309 TTGTTA---CCACCTTGATCCACATAGCGAGCAGTATTGTTGTATACACGTAGCATGGGC 1078365 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823 | ||| |||| || | ||||| || || |||| || | || | | | Sbjct 1078366 ACAATGCCATTGGAATAGCCATTGGTACCAGCAATATATGAGCCAGATGCACGAATGTTG 1078425 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 ||||| | | |||||||| || ||| |||||| || || | || | | || || Sbjct 1078426 TGGATATTAAGACCAATACCACCTGCCGTCTTTGAAATCTGGGAGCAAATCTTGAGTGTC 1078485 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 ||||||| || | || ||||| ||||| | | | | ||| || || | || Sbjct 1078486 TCATAGATGCCTTCAATGGAGTCTTCCTTCATAGTCAACAAGAAACATGATGATAATTGT 1078545 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA-CCTTGGGA 112002 || | ||||| || |||||||| || ||||| | || || |||| ||| | | ||| Sbjct 1078546 GGACGAGGTGTGCCGGCATTGAAAAGTGTTGGACTGGCATGTGTGAA-ATAGCGCTCGGA 1078604 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062 |||| || ||| || || | | ||| |||||||||||| || || || || | ||| || Sbjct 1078605 CATCAAGTTGTAAGTTTCAATGGCAGCATCAATGTCTTCACCATGAATACCAACTGCAAC 1078664 Query 112063 CCGCATGAACATGTACTGTGG 112083 ||||| ||||||| ||||| Sbjct 1078665 ACGCATCAACATGTGTTGTGG 1078685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031419070400