Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq12 152 6e-32 seq45 116 5e-21 seq74 113 6e-20 >seq12 Length=2893134 Score = 152 bits (168), Expect = 6e-32 Identities = 533/817 (65%), Gaps = 25/817 (3%) Strand=Plus/Plus Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAA-CTCTTAATGGTGCCCAAGTTCTTTTGATT 118813 ||||| | ||| || ||||| ||| ||| | || |||||||||||||| | ||||| Sbjct 1077880 TACTCGACAATCTCTGTGCA-AAGATTGCTGCATTTGATGGTGCCCAAGTTTTGCTGATT 1077938 Query 118814 TGACTTTGTG-TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGG 118872 || |||| | || || ||||||||||| | |||| |||| || || || ||||| | Sbjct 1077939 GGA-TTTGCGATTGCATGCATCCTTGTATAACATGAATGGACCACCAGTTTCAGTTTGTG 1077997 Query 118873 ACTTGAGAATAGCCTTCCAGACATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTC 118930 | | ||||| | ||| | | || || || | ||| || || || || Sbjct 1077998 CTTCCAAGATAGCATACCAAAGCTTTTGTGCCTTGACAACCTTACGT--GCACGTCCTTC 1078055 Query 118931 TTCCTCGTACTTTGTG-TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTG 118989 ||| || || ||| || | | ||||| |||| ||| | || | || | Sbjct 1078056 ACGCTCATA-TTGGTGATACAACTCCTCAAATTCTTTTCCCCAAACTTCATGCAATCCAG 1078114 Query 118990 GTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 119049 |||| | | |||||| |||||| ||| | |||| |||||||| || | |||||| | Sbjct 1078115 GTGCTTCACTTGGGCAAAAGAGACTCCAATCACCATTTTCCTCAACACGTTGCATGAACA 1078174 Query 119050 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 119109 |||||| ||||| | || | || | ||| || ||| |||||| | || || | Sbjct 1078175 AGTCTGGAATCCACAAGGCATAAAACAAATCACGTGCACGATTTTCTTCTTTGCCATGGT 1078234 Query 119110 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 119169 | || || ||||||||||| | || ||| | ||||| ||||| || || | || | Sbjct 1078235 TCTTGCGTAAATCCAAAAAGTCAAAGACATCAGGATGCCATGGTTCAAGATAGATGGCAA 1078294 Query 119170 TTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATA 119223 || || | | || |||| | || | ||||| | ||||| ||| ||| Sbjct 1078295 ATGCACC---AGGTCGCTTGTTACCACCTTGATCCACATAGCGAGCAGTATTGTTGTATA 1078351 Query 119224 CACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCC--CCGAATACGAGACTT 119281 |||| ||||| || | || |||| ||| | |||||| || || | ||| ||| | Sbjct 1078352 CACGTAGCATGGGCACAATGCCATTGGAATAGCCATTGGTACCAGCAATATATGAGCCAG 1078411 Query 119282 ATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGC 119341 || || | | | |||||| | | ||||||||| |||||| |||||| || || | Sbjct 1078412 AT--GCACGAATGTTGTGGATATTAAGACCAATACCACCTGCCGTCTTTGAAATCTGGGA 1078469 Query 119342 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 119401 ||| | |||| | | ||||| || || || ||||| |||| | | | | ||| Sbjct 1078470 GCAAATCTTGAGTGTCTCATAGATGCCTTCAATGGAGTCTTCCTTCATAGTCAACAAGAA 1078529 Query 119402 GCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGAT 119461 || || | ||| || | ||||| || || ||||| || ||||| | || || | Sbjct 1078530 ACATGATGATAATTGTGGACGAGGTGTGCCGGCATTGAAAAGTGTTGGACTGGCATGTGT 1078589 Query 119462 GAACATA-CCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGT 119520 ||| ||| | | ||||||| || ||| || || | | | || ||||||||| || | Sbjct 1078590 GAA-ATAGCGCTCGGACATCAAGTTGTAAGTTTCAATGGCAGCATCAATGTCTTCACCAT 1078648 Query 119521 GAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 ||||||| | | || ||||| ||||||| ||| || Sbjct 1078649 GAATACCAACTGCAACACGCATCAACATGTGTTGTGG 1078685 Score = 140 bits (154), Expect = 4e-28 Identities = 534/823 (65%), Gaps = 34/823 (4%) Strand=Plus/Plus Query 117843 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 117902 |||||||| || ||||| || || | ||||||| |||| | ||||| | ||||||| Sbjct 1076912 TAGTACATGCCAGTCTTAAGACCTTTCTTCCAGCCATAAAAGTGCATGCTAGTCAACTTG 1076971 Query 117903 GAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG-AAGCGTCC 117961 | | |||| | ||||| | ||||| ||||| ||||| || ||||| || Sbjct 1076972 CCAAAGTTTGGTTCACCAATGAAAATGTTCAAGCTTTGACTCTGATCAATATAAGCG-CC 1077030 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATT--TCCCACACAGTCCTGTAG 118019 ||||| || ||||||||||| | | | | | || ||||| |||||| ||||| Sbjct 1077031 ACGATCGGCTGCCATATCAATGA--TGGTACGTTGAGAAAGCTCCCATACAGTCTTGTAG 1077088 Query 118020 AGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCAC---CCGCCTTG 118076 || ||||| | || | |||||||| ||| || || || ||| | | | || Sbjct 1077089 AGATTCTTGAGCTCCTGTGGGATATTGGGTATACGCTGAATCGAGCCATTATCTGACATG 1077148 Query 118077 ACCATGAGATCCTTCA---TATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | ||| || ||| | |||| || ||| ||||| || | ||||||| || Sbjct 1077149 ATCAT---ATTCTTGACATTATCATT---CCATAGACCCATTTCCACAAGATCCTTCAAA 1077202 Query 118134 AG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191 || ||| |||||||| || ||||| || | |||| ||| | ||||| Sbjct 1077203 AGCCATGG--ATTGACAATTTGGAATTCACCAGCAATCACACGTCGAGTATACAAATTGG 1077260 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251 ||||| || |||||||| || ||| || | |||||| | || || ||||| |||| Sbjct 1077261 ATGTGTAAGGTTCAAAGCATTCGTTGAAGCCAAGGATTTGTGAAGTAGATGCTGTAGGCA 1077320 Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGT 118311 | || |||| | || ||||| ||||| || | ||| || ||| | | Sbjct 1077321 TAGGCGCCACCAAGAGTGAATTACGAAGACCATTCTTTGCAATCTTTTGCTTCAATTCAG 1077380 Query 118312 CCCAGTCGTAGTTGAGCTTTG-TCTC----CCCCTGCCACATATCAAACTGGAGGATACC 118366 |||| || | || |||| | | | || ||| | |||| | || || || Sbjct 1077381 CCCAATCCCAA---AGATTTGATGGCGTAACTCC--CCATAGATCATATTGAAGTTGTCC 1077435 Query 118367 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA 118426 || ||| || || ||||| ||| |||||||||| | || || || | || | |||| | Sbjct 1077436 TTTGGAAGCAGGTGATCCATCATATGTCTCATAAGTACCATCCACAGCAGCAAGTTCGCA 1077495 Query 118427 GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGC 118486 ||||| | || || ||||| ||||||||||| || | | ||| | |||||| Sbjct 1077496 AGATGCCTCCAATGCAGCATGATAGATTGTTTCAAAGATTTGCGTATTGAGCTTCTTGGC 1077555 Query 118487 CTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACAC 118545 || ||||| || | || ||| ||| ||||| ||||||| |||||||| |||| Sbjct 1077556 TTCTGGTGAATCGAAAG-GATAACGCATCAACATAAAAGCATCCGCCAGACCTTGTACAC 1077614 Query 118546 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAAT 118605 | || ||||| || ||||| | ||| || | ||| | | || |||||| | | Sbjct 1077615 CAAGACCAATGGGACGATGACGGCGATTTGAACGCTCAGCTTCCACGACAGGATAATAGT 1077674 Query 118606 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 118648 | |||| || | | | || ||||| ||||| |||||||| || Sbjct 1077675 TGATATCAATGATCTTGTTGAGATTCTTGGTAACAACCTTGGT 1077717 >seq45 Length=1879501 Score = 116 bits (128), Expect = 5e-21 Identities = 162/223 (73%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATT-CGAGAAGCACAGACC 130074 ||||| || ||| ||||| || |||||||| ||||| ||||| | | ||| || || Sbjct 1418376 GCAAAATCAGTGTGAAGACCTTCATCACGGGAAATGAGCTCATTGCTAAAAGTCAAG-CC 1418434 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| ||||| || ||||| | ||| || || | | ||| |||||||| |||||||| Sbjct 1418435 TGGCATAAGACCACGTTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAAAAGAAGAT 1418494 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 || || ||| || || |||| ||||| ||||||||||| | | ||| || ||| Sbjct 1418495 GCCTTCTACAGCAGCAAAAGCAACAAGACGTTCAGCAAAGGAAC----CATTGGATGAAA 1418550 Query 130195 -CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 130236 |||||| | ||||| | || || |||| ||| || || || Sbjct 1418551 TCCACTTGAAGGCCCAGTCAGCTTTCTTCTTGATGCAAGGAAC 1418593 >seq74 Length=1162362 Score = 113 bits (124), Expect = 6e-20 Identities = 262/391 (67%), Gaps = 8/391 (2%) Strand=Plus/Plus Query 11802 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 11861 || ||||| ||| | || ||| ||| ||||||||| ||| | |||||||| || Sbjct 830372 TACCAAGCTTCTACTTCCGAGTTGTATGGTAAAGTGGTTGAAACTCCACAAAAGGAAACC 830431 Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 11921 || || |||||||| || || |||||| || | ||| | | | ||| || Sbjct 830432 ACTCCTTTCTATCCTCGTTCACCCTATGGTGTTGCCAAGTTATATGGTTACTGGATCACT 830491 Query 11922 AAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAG 11981 || || || |||||||||| | | | ||| ||| ||||||||||||||| ||||| Sbjct 830492 GTCAACTATCGTGAATCCTATGATATGTATGCATGCAATGGTATTCTCTTCAATCACGAA 830551 Query 11982 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATC 12041 || || || ||||||| ||| ||||||| |||||||| || | | | ||| Sbjct 830552 TCTCCACGCCGTGGCCGTACTTTTGTGACAAGAAAGATCACTCGTGCTGTTGCTGATATC 830611 Query 12042 ---GTGGCGGGTGAGAGGGAGTTCATTGAAT-TGGGGAACCTCAACGCCGAGAGGGACTG 12097 ||| || | || || ||| || | || ||| | | ||| || | || || Sbjct 830612 CATTTGGGACGTCA-AGAATGT---TTGTATCTTGGTAACATTGATGCCAAGCGTGATTG 830667 Query 12098 GGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 12157 ||| ||||| |||||||| |||| |||||||||| | ||||||||||| || | || Sbjct 830668 GGGTCATGCTCGTGACTATGTCGAAGGCATGTGGCTCATGCTTCAACAAGACAAGCCTGA 830727 Query 12158 CGAATATGTCGTCGCGACGGGGGAGACACAC 12188 || | ||| | || || || || || ||| Sbjct 830728 AGACTTTGTTTTGGCCACTGGTGAAACTCAC 830758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434627947440