Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq73 104 3e-17 seq2 96.9 4e-15 seq12 89.7 6e-13 >seq73 Length=1220876 Score = 104 bits (114), Expect = 3e-17 Identities = 120/157 (76%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 78187 CGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATA 78246 |||| || ||||||||||||||| |||||||| ||||| |||||||| || | ||||||| Sbjct 415967 CGTGATCTCAAATAGTACATGCCGGTCTTGAGCCCCTTTTTCCATCCATAAAAGTGCATA 415908 Query 78247 CTCGACAGCTTGGCCAGACTCGGGTTCTCC-ATGAAGATGTTGAGCGACTGGGA--CTGG 78303 || | ||||| |||| | | |||||| || |||||||| || | ||| || ||| Sbjct 415907 CTTGTGAGCTT-GCCAAAGTTGGGTTCGCCAATGAAGATATTCA--AACTTTGACTCTGA 415851 Query 78304 TCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGA 78340 || || | ||||| || || || ||||| || |||| Sbjct 415850 TCAATAAAGGCACCACGATCAGCAGCCATATCAATGA 415814 Score = 86.0 bits (94), Expect = 7e-12 Identities = 135/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 20628 TTTACAGGACCGTATGGGAAATCCCACAGAAGAG-CATCATCGACATGGCGGCCGATCGC 20686 |||||| ||| || |||||| | ||||| | | | |||||| || ||||| || ||||| Sbjct 415778 TTTACAAGACTGTTTGGGAACTACCACA-ACGTGTCATCATTGATATGGCTGCTGATCGT 415836 Query 20687 GGCGCCTACATCGACCAG--TCCCAGTCGCTCAATGTCTTCAT-GGAGAATCCGAGCCTG 20743 || |||| || || ||| || ||| | ||| ||||||| || ||| || | || Sbjct 415837 GGTGCCTTTATTGATCAGAGTCAAAGTT--TGAATATCTTCATTGGCGAACCCAACTTTG 415894 Query 20744 GCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTAC 20803 || ||||| | ||||| | || || ||| | |||||||||||||| ||||||||| Sbjct 415895 GC-AAGCTCACAAGTATGCACTTTTATGGATGGAAAAAGGGGCTCAAGACCGGCATGTAC 415953 Query 20804 TATCTG 20809 ||| || Sbjct 415954 TATTTG 415959 >seq2 Length=1153633 Score = 96.9 bits (106), Expect = 4e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATA 59990 || ||||||||||| | | ||||| | | | ||| ||||| ||||||| | Sbjct 770354 AAGGCAGAATGGGCATTTCGATGGATCTCTTCCAATGGATCTTTTGCTGAACGTCTAGTT 770413 Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || || || ||| |||||||| |||||||| ||||| || || | |||| || ||||| Sbjct 770414 GCATTCGC-TGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCTTCTATCTTTTGGCT 770472 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 |||||||||||| | ||||| || || | ||| |||||||| ||||| || || || Sbjct 770473 CAAAAAGCGTGGATTGATGCCAGGTCTTACATTCAGTAACGAGCTTATTTCACGTGATGA 770532 Query 60110 GGGCCTCCATCAGGAGTTTGCA 60131 || | ||| || |||||| Sbjct 770533 AGGATTACATACCGATTTTGCA 770554 >seq12 Length=2893134 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/159 (74%), Gaps = 10/159 (6%) Strand=Plus/Plus Query 78187 CGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATA 78246 || || || |||||||||||||| ||||| ||||| |||||||| || || | |||||| Sbjct 1076900 CGAGTGCGTAAATAGTACATGCCAGTCTTAAGACCTTTCTTCCAGCCATAAAAGTGCATG 1076959 Query 78247 CTCGACAGCTTGGCCAGACTCGGGTTCTCC-ATGAAGATGTT-GAGC---GACTGGGACT 78301 || | || ||| |||| | | ||||| || ||||| ||||| ||| |||| || Sbjct 1076960 CTAGTCAACTT-GCCAAAGTTTGGTTCACCAATGAAAATGTTCAAGCTTTGACT----CT 1077014 Query 78302 GGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGA 78340 | || || || || || || ||||| ||||| || |||| Sbjct 1077015 GATCAATATAAGCGCCACGATCGGCTGCCATATCAATGA 1077053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524292614560