Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq73 105 7e-18 seq74 95.1 1e-14 seq24 87.8 2e-12 seq45 86.0 7e-12 >seq73 Length=1220876 Score = 105 bits (116), Expect = 7e-18 Identities = 332/508 (65%), Gaps = 6/508 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCG--TGAGACGTACG 53252 ||||| || || | |||||||| ||||| || || || | | | |||||| ||| Sbjct 414241 ATGCGTGTTGCTGTTGGTATCCATGGTGAAGA-TAT-CGATTCTGCTATTGAGACTTACC 414298 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| | | |||||| || | || || ||| ||||||| |||||||| Sbjct 414299 ACTTGATGTCGGAGCGTTTCTTTACACATGGCAGTCCTACCTTGTTCAATGCTGGTACTC 414358 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 | || ||| |||| ||||||| || || | ||||||||||| || || || |||| Sbjct 414359 CACGTCCACAGCTGTCTTCCTGCTTCTTGTTGACCATGAAGGATGATTCAATTGAAGGCA 414418 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | || ||||| || ||| |||||| | || |||||| | |||||||| ||| | Sbjct 414419 TTTATGAGACACTAAAGACCTGTGCCAAGATTTCCAAGACAGCAGGTGGTATTGGTCTTA 414478 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| | ||||| | || | || || || || || || | | Sbjct 414479 ATATCCACAACATTCGTGCTACTGGATCTTACATTGCTGGTACCAATGGATATTCCAACG 414538 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | || || || ||| | || || |||||||| || || || || || | || |||||| Sbjct 414539 GCATTGTTCCCATGTTACGTGTGTTCAACAATACAGCTCGTTATGTGGATCAAGGTGGTA 414598 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||| || | || || ||||| | || | | || | Sbjct 414599 ACAAGCGACCTGGTGCATTTGCCATGTATTTGGAACCATGGCATCCTGATGTGTTTGACT 414658 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACA 53671 || | || |||| ||| || || | ||||||| || ||| ||||| ||||| Sbjct 414659 TTTTGGATTTGCGCAAGAACCATGGCAAGGAAGAGAATCG-TGCACGTGATTTGTTTTAT 414717 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGC 53699 || |||||||||| ||| | || |||| Sbjct 414718 GCCTTGTGGATTCCAGACATGTTTATGC 414745 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 55737 TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAGTGCTGATCGT 55795 ||||| ||| || ||||| | ||||| | | ||| | ||||| ||| |||||||||| Sbjct 415778 TTTACAAGACTGTTTGGGAACTACCACA-ACGTGTCATCATTGATATGGCTGCTGATCGT 415836 Query 55796 GGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT-GGAGAATCCTTCACTGGC 55854 ||||| | || || ||| || | |||| |||||||| || ||| || | |||| Sbjct 415837 GGTGCCTTTATTGATCAGAGTCAAAGTTTGAATATCTTCATTGGCGAACCCAACTTTGGC 415896 Query 55855 CAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914 ||| | | ||||||||||| || ||||| ||||| |||||||| || |||||||| Sbjct 415897 -AAGCTCACAAGTATGCACTTTTATGGATGGAAAAAGGGGCTCAAGACCGGCATGTACTA 415955 Query 55915 TCTG 55918 | || Sbjct 415956 TTTG 415959 >seq74 Length=1162362 Score = 95.1 bits (104), Expect = 1e-14 Identities = 221/332 (67%), Gaps = 11/332 (3%) Strand=Plus/Minus Query 158957 TGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCC 159016 |||| || || ||||| || | |||||||| || || | ||||| |||||||||| Sbjct 830759 TGTGAGTTTCACCAGTGGCCAAAACAAAGTCTTCAGGCTTGTCTTGTTGAAGCATGAGCC 830700 Query 159017 ACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGA 159076 ||||| | ||||| || || | || |||||||| || ||||||||||| ||||| || | Sbjct 830699 ACATGCCTTCGACATAGTCACGAGCATGACCCCAATCACGCTTGGCATCAATGTTACCAA 830640 Query 159077 GCTCGATGACTTTTCCAGACTTTTTCCA-------CTCAGCCAGACCGAGCGTGATCTTG 159129 | | | | ||| ||| | ||| ||||| | | | | |||||||| Sbjct 830639 GAT--ACAAACATTCTTGAC--GTCCCAAATGGATATCAGCAACAGCACGAGTGATCTTT 830584 Query 159130 CGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAA 159189 | |||||||| || || ||| || || || || || ||||| || | || Sbjct 830583 CTTGTCACAAAAGTACGGCCACGGCGTGGAGATTCGTGATTGAAGAGAATACCATTGCAT 830524 Query 159190 GCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAG 159249 || ||| | |||||| || || || || ||| |||||||| ||| | | ||||| Sbjct 830523 GCATACATATCATAGGATTCACGATAGTTGACAGTGATCCAGTAACCATATAACTTGGCA 830464 Query 159250 ACGCCGTATGGACTCCGAGGATAAAATGGTGT 159281 || || || || |||||||| || || || Sbjct 830463 ACACCATAGGGTGAACGAGGATAGAAAGGAGT 830432 >seq24 Length=199139 Score = 87.8 bits (96), Expect = 2e-12 Identities = 218/330 (66%), Gaps = 11/330 (3%) Strand=Plus/Plus Query 158959 TGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCAC 159018 || || || ||||| || | |||||||| || || | ||||| |||||||||||| Sbjct 183624 TGAGTTTCACCAGTGGCCAAAACAAAGTCTTCAGGCTTGTCTTGTTGAAGCATGAGCCAC 183683 Query 159019 ATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGC 159078 ||| | ||||| ||||| | || || ||||| || ||||||||||| ||||| || || Sbjct 183684 ATGCCTTCGACATAATCACGTGCATGTCCCCAATCACGCTTGGCATCAATGTTACCAAGA 183743 Query 159079 TCGATGACTTTTCCAGACTTTTTCCA-------CTCAGCCAGACCGAGCGTGATCTTGCG 159131 | | | ||| ||| | ||| ||||| | | | | || ||||| | Sbjct 183744 T--ACAAACATTCTTGAC--GTCCCAAATGGATATCAGCAACAGCACGAGTAATCTTTCT 183799 Query 159132 CGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGC 159191 |||||||| || || ||| || || || || || || || || | || || Sbjct 183800 TGTCACAAAAGTACGGCCACGGCGTGGAGATTCGTGATTGAAGAGGATACCATTGCATGC 183859 Query 159192 GAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAGAC 159251 ||| || |||||| || || || || ||| |||||||| ||| | | ||||| || Sbjct 183860 ATACATGTCATAGGATTCACGATAGTTGACAGTGATCCAGTAACCATATAACTTGGCAAC 183919 Query 159252 GCCGTATGGACTCCGAGGATAAAATGGTGT 159281 || || || |||||||| || || || Sbjct 183920 ACCATAGGGTGAACGAGGATAGAAAGGAGT 183949 >seq45 Length=1879501 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||| | | || | ||||| ||| | | ||| |||||||| ||||| ||| Sbjct 1418394 CCTTCATCACGGGAAATGAGCTCATTGCTAAAAGTCAAGCCTGGCATAAGACCACGTTTC 1418453 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||||||||||| | || || ||| |||||||||||||| ||| ||||| Sbjct 1418454 TTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCTACAGCAGCAAAA 1418513 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCT 74948 || ||||| |||| || || | ||| ||| | ||||| | ||||| |||||| Sbjct 1418514 GCAACAAGACGTTCAGCAAAGGAACCATTGGATGAAATCCACTTGAAGGCCCAGTCAGCT 1418573 Query 74949 TT 74950 || Sbjct 1418574 TT 1418575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215493825200