Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4 114 8e-21 seq9 113 3e-20 seq1 102 5e-17 seq34 89.7 3e-13 >seq4 Length=1091430 Score = 114 bits (126), Expect = 8e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || |||||| ||||||||| ||||| ||||| || Sbjct 753485 CCACCACGAAGACGAAGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAC 753426 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | |||||||||||||| || ||||| || ||||| || ||||| || || Sbjct 753425 AAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGA 753366 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| |||||| | | || ||| | ||| | || ||| || Sbjct 753365 ATGCCTTCCTTATCTTGGATCTTGT-TCTTGACGTTTTCAATGGAATCAGAAGACTCGAC 753307 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| || || || || ||||| | || || ||||| || |||||| || Sbjct 753306 TTCCAAAGTGATAGTCTTGCCGGTAAGTGTCTTGACAAAGATTTGCATGGTG 753255 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || ||||| |||||||| ||||| || || || Sbjct 753941 CCACCACGAAGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 753882 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | |||||||||||||| || ||||| || ||||| || ||||| || || Sbjct 753881 AAAGTACGGCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGA 753822 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||||||| |||||| | || | | ||| | || ||| ||| Sbjct 753821 ATACCTTCCTTGTCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACT 753762 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || || || || ||||| || ||||| Sbjct 753761 TCCAAAGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 Score = 91.5 bits (100), Expect = 9e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||||||| | || |||||| ||||||||| ||||| || || ||| Sbjct 754169 CCGCCACGGAGACGCAACACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAA 754110 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||||||||| || || || || || | ||| || || || || || Sbjct 754109 AGAGTACGACCATCTTCAAGTTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGTGGG 754050 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | || ||||| ||| |||||| Sbjct 754049 ATACCTTCCTTATCTTGGATCTT 754027 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || ||||| |||||||| ||||| ||||| || Sbjct 753713 CCACCACGAAGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAC 753654 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||||||||| || || ||| || | ||| || ||||| || || Sbjct 753653 AAAGTACGGCCATCTTCAAGTTGCTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAGGA 753594 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| |||||| | | |||||| | ||| | || | || || Sbjct 753593 ATACCTTCCTTATCTTGGATCTTAT-TCTTAACGTTTTCAATAGAATCAGAGGATTCAAC 753535 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || || || || ||||| || ||||| Sbjct 753534 TTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753487 >seq9 Length=614693 Score = 113 bits (124), Expect = 3e-20 Identities = 111/142 (78%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 34487 TAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTC 34546 |||| || | ||||||||| | ||| |||||||||||| || ||||| |||||||| | Sbjct 95438 TAAG-CGAAGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAAAGTGTAC 95380 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | |||||||||||||| || || || || | ||| || |||||||| || | ||| | Sbjct 95379 GACCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTT 95320 Query 34607 CCTTGTCTGTGATCTTTTGTTT 34628 ||||||| ||||||||| || Sbjct 95319 CCTTGTCCTGGATCTTTTGCTT 95298 >seq1 Length=3088551 Score = 102 bits (112), Expect = 5e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| ||||||||||||||| || ||||| Sbjct 605791 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGAC 605732 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | |||||||||||||| || ||||| || | ||| || || || || || Sbjct 605731 AAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGA 605672 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||||| | | || ||| | ||| | || |||||| Sbjct 605671 ATGCCTTCCTTGTCTTGAATCTTGT-TCTTGACGTTTTCAATGGAATCAGATGACTCCAC 605613 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||| ||| || || || || || | || || || || || |||||||||| Sbjct 605612 CTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTGACGAAGATTTGCATGTTGA 605560 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| |||||||| || || || ||||| Sbjct 606019 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGAC 605960 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | |||||||||||||| || ||||| || | |||||| ||||| || || Sbjct 605959 AAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGA 605900 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || |||||| | | || ||| | ||| | || ||| || Sbjct 605899 ATGCCTTCCTTATCCTGGATCTTGT-TCTTGACGTTTTCAATAGAATCAGATGACTCAAC 605841 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || || || || ||||| |||||||| Sbjct 605840 TTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| ||||||||||||||| ||||| || Sbjct 606247 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGAC 606188 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| ||||| || || ||||| || || || || ||||| || || Sbjct 606187 AAAGTACGACCATCTTCGAGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGA 606128 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| |||||| | | || || | ||| | || ||| || Sbjct 606127 ATGCCTTCCTTATCTTGGATCTTGT-TCTTGACATTCTCAATAGAATCAGATGACTCAAC 606069 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || || || || ||||| |||||||| Sbjct 606068 TTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 >seq34 Length=2204315 Score = 89.7 bits (98), Expect = 3e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || |||||| ||||||||| ||||| || || || Sbjct 1854167 CCACCACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 1854108 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||||||||| || || || || || ||||| || ||||| || || Sbjct 1854107 AAAGTACGACCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGA 1854048 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | || ||||| ||| |||||||| || Sbjct 1854047 ATGCCTTCCTTATCTTGAATCTTTTGCTT 1854019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729316153242