Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9 176 4e-39 seq4 147 2e-30 seq1 136 3e-27 seq34 118 9e-22 seq12 91.5 1e-13 >seq9 Length=614693 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || |||||| |||| || |||||||||||| ||||| Sbjct 95448 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACACTTGAAGTGGAATCGTCC 95507 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||||| ||||| | || ||||||||||| ||||| || || || ||||| Sbjct 95508 GATTCTATTGAGAATGTCAAGAACAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 95567 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| |||||||| | |||||| | || |||| ||||||||| Sbjct 95568 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGACGGCCGTACTCTTTCTGATTACAAC 95627 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| || || || || || ||||| || || ||||| || || Sbjct 95628 ATCCAAAAAGAATCCACGTTGCACTTGGTATTACGCTTGCGTGGCGG 95674 Score = 161 bits (178), Expect = 9e-35 Identities = 181/241 (75%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 26978 TTTAT-ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAG 27036 ||||| || | ||||| || ||||| || ||||| || || ||| | || || | |||| Sbjct 95209 TTTATTACACAATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACATTGGAAG 95268 Query 27037 TGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATAC 27096 | ||| | || || || ||||| | ||||| ||||| || || ||||| ||||| || | Sbjct 95269 TAGAATCATCTGATTCTATTGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATTC 95328 Query 27097 CACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT 27156 | || || || || ||| | || | ||| ||||||||| | ||||| || || ||| Sbjct 95329 CTCCGGACCAGCAACGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGTCGTACACTTT 95388 Query 27157 CCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 |||||||||| ||||||||||||||||| ||||||||||| | || || || ||||| | Sbjct 95389 CCGATTACAATATTCAAAAGGAGTCGACTTTACATTTGGTGCTTCGCTTACGTGGTGGTA 95448 Query 27217 T 27217 | Sbjct 95449 T 95449 >seq4 Length=1091430 Score = 147 bits (162), Expect = 2e-30 Identities = 181/246 (74%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 26972 TTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCT 27031 ||||| ||| ||| ||||||| || ||||| || || || ||||||||| |||| ||| | Sbjct 753244 TTTTACTTT-TACACCATGCAAATCTTTGTCAAGACACTTACCGGCAAGACTATCACTTT 753302 Query 27032 TGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||||| || | || || || ||||| | ||||| | || || ||||| || ||||| Sbjct 753303 GGAAGTCGAGTCTTCTGATTCCATTGAAAACGTCAAGAACAAGATCCAAGATAAGGAAGG 753362 Query 27092 CATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGAC 27151 ||| || || || || || ||||| || | || ||||||||| | ||||| || || Sbjct 753363 CATTCCTCCAGACCAGCAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGTCGTAC 753422 Query 27152 CGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGG 27211 | || ||||||||||| ||||||||||| || | || ||||| | ||| | || || Sbjct 753423 TTTGTCTGATTACAACATCCAAAAGGAGTCCACTCTTCACTTGGTGCTTCGTCTTCGTGG 753482 Query 27212 TGGCAT 27217 ||| || Sbjct 753483 TGGTAT 753488 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| |||||| | || ||| | ||||| ||| | || Sbjct 753943 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAAGTTGAATCTTCT 754002 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | ||||| | || || ||||| || ||||| || ||||| ||||| Sbjct 754003 GATTCTATTGAAAATGTCAAGAACAAGATCCAAGATAAGGAAGGTATCCCACCAGATCAG 754062 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| ||||| ||| | ||||| || || |||| || |||||| Sbjct 754063 CAACGTCTCATTTTCGCTGGCAAGCAACTTGAAGATGGTCGTACTCTTTCTGACTACAAC 754122 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| || | || | || |||||| | || || || Sbjct 754123 ATCCAAAAGGAGTCCACTCTTCACCTCGTGTTGCGTCTCCGTGGCGG 754169 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| |||||| | || ||| | ||||| ||| | || Sbjct 753487 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAAGTTGAATCCTCT 753546 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | || || | || || ||||| || ||||| || || || || || Sbjct 753547 GATTCTATTGAAAACGTTAAGAATAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAG 753606 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||| ||| | ||||| | || | || ||||||||| Sbjct 753607 CAACGTCTCATTTTTCGTGGCAAGCAACTTGAAGATGGCCGTACTTTGTCTGATTACAAC 753666 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | || ||||| | ||| | || ||||| || Sbjct 753667 ATCCAAAAGGAATCTACTCTTCACTTGGTGCTTCGTCTTCGTGGTGGTAT 753716 >seq1 Length=3088551 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| |||||| |||| ||| | ||||| || | || Sbjct 606021 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCT 606080 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||||| ||||| | || || ||||| || |||||||| || || || || Sbjct 606081 GATTCTATTGAGAATGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAG 606140 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | || || || ||| | ||||| || || | || ||||||||| Sbjct 606141 CAACGCTTGATCTTTGCAGGAAAGCAACTCGAAGATGGTCGTACTTTGTCTGATTACAAC 606200 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | || ||||| | ||| | || ||||| || Sbjct 606201 ATTCAAAAGGAGTCTACTCTTCACTTGGTCCTTCGTCTTCGTGGTGGTAT 606250 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || || |||||| |||| || | || ||||| | || Sbjct 605564 CATGCAAATCTTCGTCAAGACCCTTACTGGCAAGACTATCACCTTGGAGGTGGAGTCATC 605623 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || || ||||| | ||||| | || ||||||||||| |||||||| || || ||||| Sbjct 605624 TGATTCCATTGAAAACGTCAAGAACAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCA 605683 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | || ||||||||| | ||||| || || | || || ||||| Sbjct 605684 GCAACGTCTCATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAA 605743 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||| || | || ||||| | ||| | || ||||| || Sbjct 605744 CATTCAAAAGGAGTCTACTCTTCACTTGGTCCTTCGTCTTCGTGGTGGTAT 605794 >seq34 Length=2204315 Score = 118 bits (130), Expect = 9e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||||||||||||| ||||| ||||| |||||||| || |||||||| || || || Sbjct 1853998 TCTGACTCGATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGAC 1854057 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||||| || | ||| ||||| ||| | ||||| || || | || || ||| Sbjct 1854058 CAGCAACGTTTGATTTTCGCTGGCAAGCAACTTGAAGATGGTCGTACTTTGTCTGACTAC 1854117 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| || | || ||||| | ||| | || ||||| || Sbjct 1854118 AACATCCAAAAGGAGTCCACTCTTCACTTGGTCCTCCGTCTTCGTGGTGGTAT 1854170 >seq12 Length=2893134 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||||||||||| | ||||| ||||| || ||||| || || || || || || || Sbjct 1461444 TCTGACTCGATTGAAAATGTCAAGCAAAAGATCCAAGATAAGGAGGGAATTCCTCCAGAC 1461503 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||||| || | ||| ||||| ||| | || || || || | || || ||| Sbjct 1461504 CAGCAACGTTTGATTTTCGCTGGCAAGCAACTCGAGGATGGTCGTACTTTGTCTGACTAC 1461563 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| || | || ||||| | ||| | || ||||| || Sbjct 1461564 AATATCCAAAAGGAGTCTACTCTTCACTTGGTCCTTCGTCTTCGTGGTGGTAT 1461616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917997700480