Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq9 174 4e-38 seq4 161 2e-34 seq1 158 3e-33 seq34 138 3e-27 seq12 134 3e-26 >seq9 Length=614693 Score = 174 bits (192), Expect = 4e-38 Identities = 158/199 (79%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| ||||| ||||| || || ||||| | ||| || | |||||||| || || ||||| Sbjct 95417 AGTCGACTCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCTTCAAGTTGTTTGCC 95358 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||||| || || ||||| ||||| ||||||| |||||||||||||||||||||||| || Sbjct 95357 AGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTT 95298 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 |||||||| || | ||||| ||| || || | ||||| |||||||| |||||||| Sbjct 95297 GACGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTCTTTCCAGTGAGAGT 95238 Query 211097 CTTTACAAACACCTGCATT 211115 ||| ||||| | |||||| Sbjct 95237 CTTGACAAAGATTTGCATT 95219 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| |||||||||||||| ||||| | ||| || | || ||||| ||||| ||||| Sbjct 95644 GTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCGTCTTCAAGCTGTTTGCCA 95585 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | ||||| || |||||||||| ||||||||||| || ||||| | || Sbjct 95584 GCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTGTTCTTG 95525 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || || | || || ||| || || || ||||| ||||| || || |||||| Sbjct 95524 ACATTCTCAATAGAATCGGACGATTCCACTTCAAGTGTGATAGTCTTGCCAGTAAGAGTC 95465 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 95464 TTGACAAAGATTTGCAT 95448 >seq4 Length=1091430 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||||||||||||| ||||||||||| ||||| | | || Sbjct 753480 ACGAAGACGAAGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGT 753421 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || |||||||| ||||| | ||||| ||||| ||||||| || Sbjct 753420 ACGACCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCC 753361 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || |||||||| | || |||||||| |||| ||||| || || || | Sbjct 753360 TTCCTTATCTTGGATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAA 753301 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || || ||||| ||||| | ||||| Sbjct 753300 AGTGATAGTCTTGCCGGTAAGTGTCTTGACAAAGATTTGCAT 753259 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||||||||||||||| ||||||||||| || || | ||| || | |||||||| Sbjct 754151 ACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCTTCA 754092 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 || |||||||| ||||| || || ||||| || || || || | |||||||| || ||| Sbjct 754091 AGTTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATACCTTCCTTATCTTGG 754032 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| | || || ||||| || | ||||| |||||| || | |||||| ||||| Sbjct 754031 ATCTTGTTCTTGACATTTTCAATAGAATCAGAAGATTCAACTTCCAAAGTGATGGTCTTG 753972 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | |||||| ||||| | ||||| Sbjct 753971 CCAGTCAAAGTCTTGACAAAGATTTGCAT 753943 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||||||| || || ||||||||||| ||||| | | || Sbjct 753708 ACGAAGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGACAAAGT 753649 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || |||||||| || || || ||||| ||||| ||||||| || Sbjct 753648 ACGGCCATCTTCAAGTTGCTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAGGAATACC 753589 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || |||||||| | || |||||||| || | |||||| |||||| || | Sbjct 753588 TTCCTTATCTTGGATCTTATTCTTAACGTTTTCAATAGAATCAGAGGATTCAACTTCCAA 753529 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || | |||||| ||||| | ||||| Sbjct 753528 AGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753487 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||||||| || || ||||||||||| || || | | || Sbjct 753936 ACGAAGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGT 753877 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || |||||||| ||||| | ||||| ||||| ||||||| || Sbjct 753876 ACGGCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACC 753817 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| |||||||| | || || ||||| || | ||||| ||||| || | Sbjct 753816 TTCCTTGTCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAA 753757 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| || || | |||||| ||||| | ||||| Sbjct 753756 AGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 Score = 109 bits (120), Expect = 1e-18 Identities = 280/422 (66%), Gaps = 6/422 (1%) Strand=Plus/Minus Query 139591 GAAGGCAAGGAGAAAAAGGTTG-CATTCGACATTGAACCTTTCCGTCCAATCAGCCAGAA 139649 |||||||||||||||||||| |||| || |||| || | || |||| | | Sbjct 372718 GAAGGCAAGGAGAAAAAGGTCAACATT-GATTTTGAGCCACACAAGCCCATCAACACGTC 372660 Query 139650 AGTTTACGCATGCGACAGTGTTTTCCATACGGATTGTCTGAAAGATCTGTTGTATGATGA 139709 | | ||| ||||||| || || || || || || ||| ||| | ||||| Sbjct 372659 ATTGTACCTGTGCGACAACAAGTTTCACACTGAAGCATTGCAAAGTCTCTTGGAAGATGA 372600 Query 139710 --CCAATCTTATGGTTTTATTATCGTGGATGGCTCCGGTGTTTTATTTGCGACTCTTTCA 139767 |||| || ||||| |||||| ||||||| |||| || |||| |||||||| Sbjct 372599 TGCCAAGTTT--GGTTTCATTATCATGGATGGTAACGGTTCATTGTTTGGCACTCTTTCT 372542 Query 139768 GGAAGTACAAGAACAACAATCTCGAGTTTCCAAGTTTGCCTTCCAAAGAAGCACGGAAGA 139827 || | ||| | ||| | | ||||| |||||||||||||| || | Sbjct 372541 GGCAATACTCGTGATGTGATCCACAAGATGCAAGTCGATCTTCCAAAGAAGCATGGTCGT 372482 Query 139828 GGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAACTACTTG 139887 || || ||||||||||| ||||||| | | || | |||||| | ||||| ||| || Sbjct 372481 GGTGGTCAATCTGCTCTTCGTTTTGCTCGTTTGCGTGAAGAAAAGCGACACAATTACGTG 372422 Query 139888 AGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAAGACAACAAGTGTTTTGTTTCT 139947 | || || || || || |||| | ||||||| | | ||| |||| || Sbjct 372421 CGCAAGGTGGCTGAACTGGCTGTACAATTCTTTATCACCAATGATAAGGTCAATGTTGCT 372362 Query 139948 GGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCTGACTTTTTT 140007 ||| |||| ||||| ||||| || || ||||||||| ||||| |||||||| | ||| Sbjct 372361 GGTCTTGTCTTGGCTGGTTCAGCTGATTTCAAGACAGAGCTCTCTCAATCTGACATGTTT 372302 Query 140008 GA 140009 || Sbjct 372301 GA 372300 >seq1 Length=3088551 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||||||||| || || |||||||| || || || | | || Sbjct 606014 ACGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGT 605955 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || |||||||| ||||| || || || ||||| ||||||| || Sbjct 605954 ACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCC 605895 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| | || |||||||| || | ||||| ||||| || | Sbjct 605894 TTCCTTATCCTGGATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAA 605835 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || | |||||| ||||| | |||||| Sbjct 605834 AGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||||||||||||||| || |||||||| || || || | | || Sbjct 606470 ACGAAGACGAAGGACAAGGTGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGACAAAGT 606411 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || || |||||||| ||||| | |||||| ||||| ||||||| || Sbjct 606410 ACGACCATCCTCAAGTTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCC 606351 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || |||||||| | || || || || || | ||||| ||||| || | Sbjct 606350 TTCCTTATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAA 606291 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || | |||||| ||||| | |||||| Sbjct 606290 AGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606249 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||||||||| ||||| ||||| ||||| || || | | || Sbjct 605786 ACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGT 605727 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || |||||||| ||||| || ||||| || || || |||| || Sbjct 605726 ACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCC 605667 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| | || |||||||| |||| ||||| || ||||| | Sbjct 605666 TTCCTTGTCTTGAATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAA 605607 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| || || || ||||| || || | ||||| || Sbjct 605606 GGTGATAGTCTTGCCAGTAAGGGTCTTGACGAAGATTTGCATGTT 605562 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||||||||| ||||| ||||||||||| || || | || || Sbjct 483748 ACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGT 483689 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 | |||||||| || |||||||| ||||| || | ||||| ||||||||||| Sbjct 483688 ACGGCCATCTTCGAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCAGGAGG 483635 >seq34 Length=2204315 Score = 138 bits (152), Expect = 3e-27 Identities = 133/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||||||||||||||| ||||||||||| || || | | || Sbjct 1854162 ACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 1854103 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || |||||||| ||||| || | ||||| ||||| ||||||| || Sbjct 1854102 ACGACCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATGCC 1854043 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTC 211063 |||||| || || |||||||| || || || || || | ||||||||| || Sbjct 1854042 TTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATCGAGTCAGAGCTGTC 1853992 >seq12 Length=2893134 Score = 134 bits (148), Expect = 3e-26 Identities = 133/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||||||||| ||||| |||||||| || || || | | || Sbjct 1461608 ACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGACAAAGT 1461549 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || |||||||| ||||| || | ||||| ||||| ||||||| ||| Sbjct 1461548 ACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATTCC 1461489 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCA 211064 ||||| || ||||||||||| || || ||||| || | ||||||||| ||| Sbjct 1461488 CTCCTTATCTTGGATCTTTTGCTTGACATTTTCAATCGAGTCAGAGCTGTCA 1461437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150900979010