Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq9 120 2e-22 seq1 100 2e-16 seq4 98.7 7e-16 >seq9 Length=614693 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || || || || || ||||| || ||||| || || | Sbjct 95448 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACACTTGAAGTGGAATCGTCC 95507 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | | || ||| ||||| |||||| | || || ||||| Sbjct 95508 GATTCTATTGAGAATGTCAAGA-ACAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCA 95566 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || || || |||||||| || ||||||| || ||| | |||||||| Sbjct 95567 GCAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGACGGCCGTACTCTTTCTGATTACAA 95626 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| ||||| || || || || ||| | ||||| || || Sbjct 95627 CATCCAAAAAGAATCCACGTTGCACTTGGTATTACGCTTGCGTGGCGG 95674 Score = 113 bits (124), Expect = 3e-20 Identities = 163/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 23595 CAATTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCT 23654 || || ||||| | |||||| || || || || || ||||| ||||| || ||||| | Sbjct 95206 CATTTTATTAC--ACAATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACATT 95263 Query 23655 CGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGG 23714 ||||| || || | || || |||||| | || ||||| || ||||| ||||| Sbjct 95264 GGAAGTAGAATCATCTGATTCTATTGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGG 95323 Query 23715 TGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--C 23772 | || || || || || ||| | || || || ||||||||||| ||||| | || | Sbjct 95324 AATTCCTCCGGACCAGCAACGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGTCGTAC 95383 Query 23773 ACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||||||| || ||||| ||||| || |||||||| || Sbjct 95384 ACTTT--CCGATTACAATATTCAAAAGGAGTCGACTTTACATTTGGT 95428 >seq1 Length=3088551 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || ||||| || ||||| || || || || ||||| | || || || || Sbjct 605562 AACATGCAAATCTTCGTCAAGACCCTTACTGGCAAGACTATCACCTTGGAGGTGGAGTCA 605621 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || | |||||| | || | || ||| ||||| ||||| | || |||||| Sbjct 605622 TCTGATTCCATTGAAAACGTCAAGAACAAGATTCAAGACAAGGAAGGCATTCCCCCAGAT 605681 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || ||| | || ||||| ||||||||||| ||||| | || ||||| || ||| Sbjct 605682 CAGCAACGTCTCATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCAGACTAC 605741 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| ||||| || Sbjct 605742 AACATTCAAAAGGAGTCTAC 605761 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || || |||||| | |||||||| || | Sbjct 605793 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCT 605852 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || | || || || || ||||| | || ||||| || Sbjct 605853 GATTCTATTGAAAACGTCAAGAACAAGATCCAGGATAAGGAAGGCATTCCTCCAGACCAG 605912 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||||||||| ||||| | || ||||| || ||||| Sbjct 605913 CAGCGTCTCATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAAT 605972 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 605973 ATCCAAAAGGAATCTAC 605989 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || || |||||| | |||||||| || | Sbjct 606021 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCT 606080 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | | || || || || ||||| | || ||||| || Sbjct 606081 GATTCTATTGAGAATGTCAAGA-ACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 606139 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || ||||| || || ||||| ||||| | || ||||| |||||||| Sbjct 606140 GCAACGCTTGATCTTTGCAGGAAAGCAACTCGAAGATGGTCGTACTTTGTCTGATTACAA 606199 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 606200 CATTCAAAAGGAGTCTAC 606217 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || || |||||| | |||||||| || | Sbjct 606249 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCT 606308 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | | || || || || ||||| | || ||||| || Sbjct 606309 GATTCTATTGAGAATGTCAAGA-ACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 606367 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || ||||| ||||||||||| || || | || ||||| || ||||| Sbjct 606368 GCAACGCTTGATCTTTGCAGGCAAACAACTTGAGGATGGTCGTACTTTGTCAGACTACAA 606427 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| || ||||| Sbjct 606428 TATCCAAAAGGAATCCAC 606445 >seq4 Length=1091430 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || || || || || |||||| | ||||| || || | Sbjct 753259 ATGCAAATCTTTGTCAAGACACTTACCGGCAAGACTATCACTTTGGAAGTCGAGTCTTCT 753318 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||||| | || | || || || || ||||| | || ||||| || Sbjct 753319 GATTCCATTGAAAACGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAG 753378 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| ||||||||||| ||||| | || ||||| ||||||||| Sbjct 753379 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCTGATTACAAC 753438 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 753439 ATCCAAAAGGAGTCCAC 753455 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || || ||| | |||||||| || | Sbjct 753715 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACTTTGGAAGTTGAGTCTTCT 753774 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || | || || ||||| |||||| | || ||||| || Sbjct 753775 GATTCTATTGAAAATGTCAAGAACAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAG 753834 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| ||||||||||| ||||| | || ||||| || |||||| Sbjct 753835 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGCCGTACTTTGTCTGACTACAAC 753894 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 753895 ATCCAAAAGGAATCTAC 753911 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || |||||| | |||||||| ||| | Sbjct 753487 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAAGTTGAATCCTCT 753546 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || | || || || || |||||| | || ||||| || Sbjct 753547 GATTCTATTGAAAACGTTAAGAATAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAG 753606 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||| ||||| ||||| ||||| | || ||||| ||||||||| Sbjct 753607 CAACGTCTCATTTTTCGTGGCAAGCAACTTGAAGATGGCCGTACTTTGTCTGATTACAAC 753666 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 753667 ATCCAAAAGGAATCTAC 753683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009295157592