Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4 161 2e-34 seq1 158 3e-33 seq9 134 3e-26 seq34 132 1e-25 seq12 132 1e-25 seq36 105 2e-17 >seq4 Length=1091430 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| ||||| ||||| ||||||| |||||||| | |||||| Sbjct 753708 ACGAAGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGACAAAGT 753649 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| ||| || || || ||||| ||||| || |||||||| Sbjct 753648 ACGGCCATCTTCAAGTTGCTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAGGAATACC 753589 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| | ||| || ||| || | || |||| ||| || || || Sbjct 753588 TTCCTTATCTTGGATCTTATTCTTAACGTTTTCAATAGAATCAGAGGATTCAACTTCCAA 753529 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||||||| || | || | |||||| Sbjct 753528 AGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753487 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| ||||| ||||| ||||||| ||||| || | |||||| Sbjct 753936 ACGAAGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGT 753877 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || || || ||||| | ||||| ||||| || |||||||| Sbjct 753876 ACGGCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACC 753817 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| | ||| ||| ||| || | || || | || || || || Sbjct 753816 TTCCTTGTCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAA 753757 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| |||||||| || | || | |||||| Sbjct 753756 AGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || ||||| |||||||| || ||||||| ||||| || | | ||| Sbjct 754164 ACGGAGACGCAACACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGT 754105 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| |||||||| || || ||||| || || || || ||||| Sbjct 754104 ACGACCATCTTCAAGTTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATACC 754045 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| | ||| ||| ||| || | || || | ||| || || || Sbjct 754044 TTCCTTATCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGATTCAACTTCCAA 753985 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||||||| || | || | |||||| Sbjct 753984 AGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753943 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| |||||||| || ||||||| |||||||| | |||||| Sbjct 753480 ACGAAGACGAAGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGT 753421 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || || || ||||| | ||||| ||||| || ||||| || Sbjct 753420 ACGACCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCC 753361 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| | ||| || ||| |||| || || | || || || || Sbjct 753360 TTCCTTATCTTGGATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAA 753301 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | || | |||||| Sbjct 753300 AGTGATAGTCTTGCCGGTAAGTGTCTTGACAAAGATTTGCAT 753259 >seq1 Length=3088551 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||| ||||||||||| ||||||| |||||| || | |||||| Sbjct 606470 ACGAAGACGAAGGACAAGGTGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGACAAAGT 606411 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || || || || || ||||| | ||||| ||||| || ||||| || Sbjct 606410 ACGACCATCCTCAAGTTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCC 606351 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| | ||| ||| || || | || || | || || || || Sbjct 606350 TTCCTTATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAA 606291 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| |||||||| || Sbjct 606290 AGTGATAGTCTTGCCAGTCAAAGTCTT 606264 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| ||||| || || ||||| | |||||||| | |||||| Sbjct 606242 ACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGT 606183 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| || || ||||| | ||||| ||||| || ||||| || Sbjct 606182 ACGACCATCTTCGAGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCC 606123 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||||||||| | ||| ||| || || | || || | || || || || Sbjct 606122 TTCCTTATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAA 606063 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| |||||||| || Sbjct 606062 AGTGATAGTCTTGCCAGTCAAAGTCTT 606036 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| ||||| || || ||||| | ||||| || | |||||| Sbjct 605786 ACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGT 605727 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || || || ||||| || ||||| || || || ||||| || Sbjct 605726 ACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCC 605667 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| | ||| || ||| |||| || || | ||||| || || Sbjct 605666 TTCCTTGTCTTGAATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAA 605607 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||||| || | || || | ||| | |||||| || Sbjct 605606 GGTGATAGTCTTGCCAGTAAGGGTCTTGACGAAGATTTGCATGTT 605562 >seq9 Length=614693 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| || || ||||| | ||||||||||| | || | |||||||| || || || || Sbjct 95417 AGTCGACTCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCTTCAAGTTGTTTGCC 95358 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 |||||| || || ||||| ||||| || ||||| ||||||||||| |||||||||||||| Sbjct 95357 AGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTT 95298 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || ||| || | || || | ||| || || || ||||| ||||| || || | ||| Sbjct 95297 GACGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTCTTTCCAGTGAGAGT 95238 Query 225696 TTTTATGAACACTTGCATT 225714 || | || | ||||||| Sbjct 95237 CTTGACAAAGATTTGCATT 95219 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||||| |||||||| | | ||| | || ||||| ||||| || ||| Sbjct 95644 GTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCGTCTTCAAGCTGTTTGCCA 95585 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | ||||| || || || |||||||||||||||||||| ||||| | ||| Sbjct 95584 GCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTGTTCTTG 95525 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| || || | || || | |||||| || | ||||| |||||||| || | ||| Sbjct 95524 ACATTCTCAATAGAATCGGACGATTCCACTTCAAGTGTGATAGTCTTGCCAGTAAGAGTC 95465 Query 225697 TTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 95464 TTGACAAAGATTTGCAT 95448 >seq34 Length=2204315 Score = 132 bits (146), Expect = 1e-25 Identities = 129/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| |||||||| || ||||||| ||||| || | |||||| Sbjct 1854162 ACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 1854103 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| |||||||| || | ||||| ||||| || ||||| || Sbjct 1854102 ACGACCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATGCC 1854043 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 |||||| ||||| ||||||||||| ||| || || | ||| ||| Sbjct 1854042 TTCCTTATCTTGAATCTTTTGCTTGACATTCTCAATCGAGTCAGAG 1853997 >seq12 Length=2893134 Score = 132 bits (146), Expect = 1e-25 Identities = 129/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| ||||| || || ||||||| |||||| || | |||||| Sbjct 1461608 ACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGACAAAGT 1461549 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || ||||| |||||||| || | ||||| ||||| || ||||| || Sbjct 1461548 ACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATTCC 1461489 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 ||||| ||||||||||||||||| ||| ||| || | ||| ||| Sbjct 1461488 CTCCTTATCTTGGATCTTTTGCTTGACATTTTCAATCGAGTCAGAG 1461443 >seq36 Length=47271 Score = 105 bits (116), Expect = 2e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 371373 TTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTATAGC 371432 |||||| | || | |||||| |||||||||| || || || ||||||||||| || || Sbjct 7181 TTTATGGAATGACATTCCAGGTGCTCTCATATTGAAAATAGTTGTAATAAAGTTCATTGC 7240 Query 371433 GCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGACGGAACC 371492 |||| | |||||| ||||||| | || | |||||| || |||||||| || || || Sbjct 7241 TCCTAACATAGAAGAAATACCTGATAAGTGAAGACTAAAGATCGCTAAATCTACAGATCC 7300 Query 371493 GCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGT 371543 || ||||||| ||||| ||| || |||||||| || || || || Sbjct 7301 ACCAGAGTGAGAAGCAATACCTGATAATGGAGGGTAAACAGTCCATCCAGT 7351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530069331356