Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq45 208 7e-49 seq2 178 1e-39 >seq45 Length=1879501 Score = 208 bits (230), Expect = 7e-49 Identities = 358/514 (70%), Gaps = 7/514 (1%) Strand=Plus/Plus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 |||||| || ||||| ||||||||||| || || |||||||||| | || || | || Sbjct 1418084 TTGGTAATCAGATACACGCTTTTCGAAAAAGTTGGTTTTGCCTTGAAGAGAGATCATGTC 1418143 Query 4319 CATAAAATCAAACGGATTAGTTGCGTTGTAATG-TTTTTCACACTTTAGAGCTACAAGCA 4377 |||||| ||||| ||||| || || |||||||| || || | || || || ||||||| Sbjct 1418144 CATAAAGTCAAATGGATTGGTAGCATTGTAATGCTTGTTGAGACCCAAG-GCGACAAGCA 1418202 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAG-TTCGCAGTTAATTCCAATTAAT 4436 | || || || |||||||| || || || | |||||| || ||| || || ||||| | Sbjct 1418203 AGCGATCGGCAACAAATTCAATGTATTGACACATGAGCTTGGCA-TTCATACCAATCAGG 1418261 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 ||| || || || | ||||| || |||||||| |||| || ||||| || ||| Sbjct 1418262 GACACGGGAAGAGCATCAGTCAAGAATTCTTGTTCAATAGCAACAGCTTCAACAATGATA 1418321 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA 4556 | || || | ||||||| || || | ||| | ||||| |||||| Sbjct 1418322 CCAAGAATACGTTCATGGGATGGTTGCTTGCGCAAATGAGAAAAGAGCAAACAAGCAAAA 1418381 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 ||| || | |||||| || | | ||| || || || ||| || || || ||||| Sbjct 1418382 TCAGTGTGAAGACCTTCATCACGGGAAATGAGCTCATTGCTAAAAGTCAAGCCTGGCATA 1418441 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 | ||| | || || |||||||| || | ||||| || ||||||||||| ||||||||| Sbjct 1418442 AGACCACGTTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCT 1418501 Query 4677 ACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTT 4736 || || ||||| || || | || | || || | | ||| | |||||| || Sbjct 1418502 ACAGCAGCAAAAGCAACAAGACGTTCAGCAAAGGAAC---CATTGGATGAAATCCACTTG 1418558 Query 4737 AATGCCCAGTTAGCTTTTTTCTTAACGCACGGAA 4770 || ||||||| |||||| ||||| | ||| |||| Sbjct 1418559 AAGGCCCAGTCAGCTTTCTTCTTGATGCAAGGAA 1418592 >seq2 Length=1153633 Score = 178 bits (196), Expect = 1e-39 Identities = 308/440 (70%), Gaps = 6/440 (1%) Strand=Plus/Minus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || || || |||||||| || ||||| || || ||||| | | ||||| | || Sbjct 770845 TTGATAATCTGACACTCGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGAGAAATCATGTC 770786 Query 4319 CATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTC-ACACTTTAGAGCTACAAGCA 4377 |||||| ||||| ||||| |||| | ||||| || || || | ||||| || | | Sbjct 770785 CATAAAGTCAAAGGGATTGGTTGAATGATAATGCTTGTCTACGCCA-AGAGCCACCAAAA 770727 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAG-TTCGCAGTTAATTCCAATTAAT 4436 || || || |||||||| || ||||| | |||||| || ||| || || ||||| || Sbjct 770726 GACGATCCGCCACAAATTCAATGTACTGACACATGAGCTTGGCA-TTCATACCAATCAAA 770668 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 ||||||| || | ||| || || ||||| || ||| | || ||||| | || ||| Sbjct 770667 GAAACAGGTAAAGCATCTGTTAAGAATTCTTGCTCGATATTAACAGCTTCAATAATGATA 770608 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAATAAACACGCAAA 4555 || || | | |||||| | || || ||| | |||||| | ||| ||||| Sbjct 770607 TCACGGATACGTTGATGAGATGGCTGATG-ACGAAGATGAGAAAACAAGAGACATGCAAA 770549 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 ||| ||| || ||||| || | ||| || |||||| || || | || ||||| Sbjct 770548 ATCGGTATGTAATCCTTCATCACGTGAAATAAGCTCGTTACTGAATGTAAGACCTGGCAT 770489 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 || || | |||||| |||||||| |||| ||||| || ||||||||||| |||||||| Sbjct 770488 CAATCCACGCTTTTTGAGCCAAAAGATAGAAGCAAAAGAACCAGAAAAGAAGATGCCTTC 770429 Query 4676 TACGGCGGCAAACGCTACTA 4695 || || || || || |||| Sbjct 770428 CACTGCAGCGAATGCAACTA 770409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049214854642