Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 127 5e-24 seq4 120 7e-22 seq9 105 2e-17 seq34 102 2e-16 seq12 87.8 4e-12 >seq1 Length=3088551 Score = 127 bits (140), Expect = 5e-24 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||||||||| ||||| ||||||||||| | ||||| | |||||| Sbjct 606232 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCATCT 606173 Query 151953 TCTAG--GCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || || ||||| |||| | |||||||| | | || |||||||| Sbjct 606172 TCGAGTTGCTTT--CCTGCAAAGATCAAGCGT-TGCTGGTCTGGAGGAATGCCTTCCTTA 606116 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || | |||||| |||| | || || ||| ||||| | ||| ||| Sbjct 606115 TCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATA 606056 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | |||||| || |||| |||||| Sbjct 606055 GTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||||||||| ||||| |||||||| || | ||||| | |||||| Sbjct 605776 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCATCT 605717 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| || | ||||| || | | || |||||||| ||| Sbjct 605716 TCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCT 605657 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || | ||||| | || | | || || ||| || || | || ||||| Sbjct 605656 TGAATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTC 605597 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || ||||| ||||||| ||||| || Sbjct 605596 TTGCCAGTAAGGGTCTTGACGAAGATTTGCATGTT 605562 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||||||||| || |||||||| ||||| || | ||||| | |||||| Sbjct 606004 AGGACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCT 605945 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| || | ||||||||| | | || |||||||| || Sbjct 605944 TCAAGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCC 605885 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || | ||||| | || | || || ||| ||||| | ||| ||||| Sbjct 605884 TGGATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTC 605825 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| || |||| |||||| Sbjct 605824 TTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 >seq4 Length=1091430 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| ||||||||||||||||| | ||||| | |||||||| | Sbjct 753465 CAAG-TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCTTCAA 753407 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| | | |||||||| | | || |||||||| ||||| | Sbjct 753406 GTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGA 753347 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || | ||||| | || | | || ||| ||| ||||| | ||| ||||| |||| Sbjct 753346 TCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTCTTGC 753287 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| || |||| ||||| Sbjct 753286 CGGTAAGTGTCTTGACAAAGATTTGCAT 753259 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || |||||||||||||| || | ||||| | |||||||| | Sbjct 753921 CAAG-TGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCAA 753863 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| | | |||||||| | | || |||||||| ||||| | Sbjct 753862 GTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGA 753803 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || | |||||| | || | || ||| ||| ||||| | |||||| || |||| Sbjct 753802 TCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTCTTGC 753743 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| || |||| ||||| Sbjct 753742 CAGTCAAAGTCTTGACAAAGATTTGCAT 753715 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || || |||||||| ||||| |||||||||||||| || | | ||| | |||||||| Sbjct 754151 ACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCTTCA 754092 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || ||||| || || | ||||| || | | ||| |||||||| ||||| Sbjct 754091 AGTTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATACCTTCCTTATCTTGG 754032 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || | |||||| | || | || ||| || ||||| | ||| || || ||| Sbjct 754031 ATCTTGTTCTTGACATTTTCAATAGAATCAGAAGATTCAACTTCCAAAGTGATGGTCTTG 753972 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||| || |||| ||||| Sbjct 753971 CCAGTCAAAGTCTTGACAAAGATTTGCAT 753943 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || ||||||||||||||||| | ||||| | |||||||| | Sbjct 753693 CAAG-TGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTCAA 753635 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | |||| | || || || || | |||||||| | | || |||||||| ||||| Sbjct 753634 GTTGCTTGCCACG--AAAAATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTATCTTG 753577 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || | || || | || | || || || ||||| | ||| || || || Sbjct 753576 GATCTTATTCTTAACGTTTTCAATAGAATCAGAGGATTCAACTTCCAAAGTGATGGTCTT 753517 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || | |||||| || |||| ||||| Sbjct 753516 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 753487 >seq9 Length=614693 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| ||||| ||||| || |||||||||| | || | |||||| Sbjct 95431 AGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCT 95372 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || ||||| || || | |||||||||| | ||||||||||| || Sbjct 95371 TCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCC 95312 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||||| ||||| | || | || || |||||||| | || || || Sbjct 95311 TGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTC 95252 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||||||||| || |||| |||||| Sbjct 95251 TTTCCAGTGAGAGTCTTGACAAAGATTTGCATT 95219 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||||||||||||||| | | ||| | || ||||| || ||| || Sbjct 95644 GTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCGTCTTCAAGCTGTTTGCCA 95585 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | | ||||| || | | || |||||||| |||||||| || | ||| Sbjct 95584 GCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTGTTCTTG 95525 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| |||| | || || || |||||||| || ||||| ||||| || |||||| Sbjct 95524 ACATTCTCAATAGAATCGGACGATTCCACTTCAAGTGTGATAGTCTTGCCAGTAAGAGTC 95465 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 95464 TTGACAAAGATTTGCAT 95448 >seq34 Length=2204315 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | |||||||| ||||| |||||||||||||| || | ||||| | ||||| Sbjct 1854153 GAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGACCATC 1854094 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || ||||| || | | |||||||| | | || |||||||| || Sbjct 1854093 TTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATC 1854034 Query 152012 TTGAATTTTTTGTTTGACAGTCTC 152035 |||||| ||||| |||||| |||| Sbjct 1854033 TTGAATCTTTTGCTTGACATTCTC 1854010 >seq12 Length=2893134 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||||||||| |||||||| ||||| || | ||||| | ||||| Sbjct 1461598 AGGACCAAGTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGACCATCC 1461539 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || | | |||||||| | | ||||| ||||| ||| Sbjct 1461538 TCGAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGAATTCCCTCCTTATCT 1461479 Query 152013 TGAATTTTTTGTTTGACA 152030 || || ||||| |||||| Sbjct 1461478 TGGATCTTTTGCTTGACA 1461461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819706033654