Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 116 4e-21 seq45 84.2 2e-11 >seq2 Length=1153633 Score = 116 bits (128), Expect = 4e-21 Identities = 342/524 (65%), Gaps = 5/524 (1%) Strand=Plus/Minus Query 23159 TTTAAAAATCTTCATCTAAAGTGAATT---TCACTGCTTTATCACTATTCATAACACCCA 23215 ||||||| || ||||||| ||||||| || | || | | | ||||||||||| Sbjct 770909 TTTAAAAGTCGGCATCTAAGGTGAATTCCTTCTCGGCAGGAGCTTTGTTCATAACACCAG 770850 Query 23216 TTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275 |||||| || || || | || || || || ||||| |||| | || || Sbjct 770849 CACGTTGATAATCTGACACTCGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGAGAAATCA 770790 Query 23276 TTTCCATAAAATCAAATGGATTAGAAGTATTATA-TACAGCTTTACATGATAATTCCTTT 23334 | |||||||| ||||| ||||| | | || ||| | | | ||| | | || Sbjct 770789 TGTCCATAAAGTCAAAGGGATTGGTTGAATGATAATGCTTGTCTACGCCAAGAG-CCACC 770731 Query 23335 AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATT 23394 ||||| | ||| || ||||||||||| || |||||||| | | || ||||| || Sbjct 770730 AAAAGACGATCCGCCACAAATTCAATGTACTGACACATGAGCTTGGCATTCATACCAATC 770671 Query 23395 AGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATT 23454 | || || | ||||| ||||||| || || || |||||| || |||| Sbjct 770670 AAAGAAACAGGTAAAGCATCTGTTAAGAATTCTTGCTCGATATTAACAGCTTCAATAATG 770611 Query 23455 ATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCA 23514 || | | ||| || | | || ||| | || |||||| | ||||||| Sbjct 770610 ATATCACGGATACGTTGATGAGATGGCTGATGACGAAGATGAGAAAACAAGAGACATGCA 770551 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 ||||| ||||| |||||||| | ||| | || ||| ||||| | |||||| Sbjct 770550 AAATCGGTATGTAATCCTTCATCACGTGAAATAAGCTCGTTACTGAATGTAAGACCTGGC 770491 Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCC 23634 || ||||| || ||||| | |||||| || | |||||| || || |||||||| || || Sbjct 770490 ATCAATCCACGCTTTTTGAGCCAAAAGATAGAAGCAAAAGAACCAGAAAAGAAGATGCCT 770431 Query 23635 TCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATT 23678 || || || || || || || |||||| | |||| | | |||| Sbjct 770430 TCCACTGCAGCGAATGCAACTAGACGTTCAGCAAAAGATCCATT 770387 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23726 ACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATG 23785 ||| | | |||||||| || | ||||| | |||||||| | ||| | ||||| | Sbjct 770280 ACTTACTGGTTTCAATAGCATCAAAGAGCATTTCTTTTTCTTGAGGATCCTTGATATAAG 770221 Query 23786 TATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCAT 23845 | ||||| | | ||| || | ||||| ||||| |||||||| ||||| || |||| Sbjct 770220 TGTCAATCAAAAGACTGTAAGTCTCAGAGTGAATGTTTTCAATCATGATCTGGAATCCAT 770161 Query 23846 AAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGT 23905 | || || | ||||||| | ||| || || || | || | | | | ||| || | Sbjct 770160 AGAAGCACTTGGCTTCAGCAATTTGGACTTCGTTGCAGAAACGCTCTACAAGATTCTCAT 770101 Query 23906 TAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACA 23943 | || |||||||| | |||||||||||||| ||| Sbjct 770100 TGACGATACCATCCGAACTGGCAAAGAAAGCAAGCACA 770063 >seq45 Length=1879501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 23723 CACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATAT 23782 |||||| | | |||||||| || | ||||| | ||||||| | ||| | |||| Sbjct 1418663 CACACTTACTAGTTTCAATCGCGTCAAAGAGCATTTCCTTTTCTTGAGAATCCTTGATAT 1418722 Query 23783 ATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACC 23842 | || ||||| | | |||||| | ||||| || || |||||||| || || || | Sbjct 1418723 AAGTGTCAATCAAAAGACTATAAGTCTCAGAGTGGATGTTTTCAATCATGATTTGGAATC 1418782 Query 23843 CATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTT 23902 |||| ||||| | ||||||| | ||| || || || | || | | | | ||| | Sbjct 1418783 CATAGAAACACTTGGCTTCAGCAATTTGGACTTCGTTGCAGAAACGCTCCACAAGATTCT 1418842 Query 23903 CGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACA 23943 | || || |||||||| | |||||||||||||| ||| Sbjct 1418843 CATTGACGATACCATCCGAACTGGCAAAGAAAGCAAGCACA 1418883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487517623600