Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9 152 1e-31 seq34 109 1e-18 seq4 109 1e-18 seq1 100 7e-16 seq12 95.1 3e-14 >seq9 Length=614693 Score = 152 bits (168), Expect = 1e-31 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || |||||||| ||||| || ||||| | || || ||| || || Sbjct 95223 CAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACATTGGAAGTAGAATCATCTGAT 95282 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || |||||||| |||||||| |||||||| |||||||| ||||||||||||||| Sbjct 95283 TCTATTGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAGCAA 95342 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || ||||| || |||||||| | || ||| ||||||| || | Sbjct 95343 CGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGTCGTACACTTTCCGATTACAATATT 95402 Query 178104 CAAAAAGAATCAAC 178117 ||||| || || || Sbjct 95403 CAAAAGGAGTCGAC 95416 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || || || ||||| || || |||||| || || Sbjct 95451 CAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACACTTGAAGTGGAATCGTCCGAT 95510 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| ||||| | |||||||| ||||| ||||| || ||||| || |||||| Sbjct 95511 TCTATTGAGAATGTCAAGAACAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCAA 95570 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || |||||||| ||||| || | |||||| | ||||| ||| || Sbjct 95571 CGTTTGATTTTCGCTGGCAAACAGCTTGAAGACGGCCGTACTCTTTCTGATTACAACATC 95630 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || |||| |||| Sbjct 95631 CAAAAAGAATCCACGTTGCA-CTTG 95654 >seq34 Length=2204315 Score = 109 bits (120), Expect = 1e-18 Identities = 119/157 (76%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 177972 GAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 || ||||| ||| | || ||||| ||||| ||||||||||| || || ||||| || ||| Sbjct 1853992 GACAGCTCTGACTCGATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAAGGCATTCCT 1854051 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091 || ||||||||||| | || ||||| || || || || |||||||| | ||| | | Sbjct 1854052 CCAGACCAGCAACGTTTGATTTTCGCTGGCAAGCAACTTGAAGATGGTCGTACTTTGTCT 1854111 Query 178092 GATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || ||| ||||||| || || || || || |||| Sbjct 1854112 GACTACAACATCCAAAAGGAGTCCACTCTTCA-CTTG 1854147 >seq4 Length=1091430 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || ||||| | || || || || || Sbjct 753262 CAAATCTTTGTCAAGACACTTACCGGCAAGACTATCACTTTGGAAGTCGAGTCTTCTGAT 753321 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| || |||||||| | ||||| || || || ||||| || ||||| ||||||||| Sbjct 753322 TCCATTGAAAACGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAGCAA 753381 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || |||||||| | ||| | | ||||| ||| || Sbjct 753382 CGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCTGATTACAACATC 753441 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 753442 CAAAAGGAGTCCACTCTTCA-CTTG 753465 Score = 100 bits (110), Expect = 7e-16 Identities = 146/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||| | || || || || ||||| | || || ||| ||| || Sbjct 753490 CAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAAGTTGAATCCTCTGAT 753549 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || ||||| || | ||||| || || || ||||| || ||||| ||||||||| Sbjct 753550 TCTATTGAAAACGTTAAGAATAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAGCAA 753609 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || || |||||||| | ||| | | ||||| ||| || Sbjct 753610 CGTCTCATTTTTCGTGGCAAGCAACTTGAAGATGGCCGTACTTTGTCTGATTACAACATC 753669 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 753670 CAAAAGGAATCTACTCTTCA-CTTG 753693 Score = 100 bits (110), Expect = 7e-16 Identities = 146/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||| | || || || || || || | || || || || || Sbjct 753718 CAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACTTTGGAAGTTGAGTCTTCTGAT 753777 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || ||||| | ||||| || ||||| ||||| || ||||| ||||||||| Sbjct 753778 TCTATTGAAAATGTCAAGAACAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAGCAA 753837 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || |||||||| | ||| | | || || ||| || Sbjct 753838 CGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGCCGTACTTTGTCTGACTACAACATC 753897 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 753898 CAAAAGGAATCTACTCTTCA-CTTG 753921 >seq1 Length=3088551 Score = 100 bits (110), Expect = 7e-16 Identities = 146/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || ||||| | || || || || || Sbjct 606024 CAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCTGAT 606083 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| ||||| | ||||| || || || ||||| || ||||| ||||||||| Sbjct 606084 TCTATTGAGAATGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAGCAA 606143 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| || ||||||||||| | ||| | | ||||| ||| | Sbjct 606144 CGCTTGATCTTTGCAGGAAAGCAACTCGAAGATGGTCGTACTTTGTCTGATTACAACATT 606203 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 606204 CAAAAGGAGTCTACTCTTCA-CTTG 606227 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || ||||| | || || || || || Sbjct 606252 CAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCTGAT 606311 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| ||||| | ||||| || || || ||||| || ||||| ||||||||| Sbjct 606312 TCTATTGAGAATGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAGCAA 606371 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || || ||||| | ||| | | || || || || Sbjct 606372 CGCTTGATCTTTGCAGGCAAACAACTTGAGGATGGTCGTACTTTGTCAGACTACAATATC 606431 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || || || ||||| Sbjct 606432 CAAAAGGAATCCACTCTTCACCTTGT 606457 >seq12 Length=2893134 Score = 95.1 bits (104), Expect = 3e-14 Identities = 116/157 (74%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 177972 GAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 || ||||| ||| | || || || ||||| |||||||| || || || || ||||| ||| Sbjct 1461438 GACAGCTCTGACTCGATTGAAAATGTCAAGCAAAAGATCCAAGATAAGGAGGGAATTCCT 1461497 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091 || ||||||||||| | || ||||| || || || ||||| ||||| | ||| | | Sbjct 1461498 CCAGACCAGCAACGTTTGATTTTCGCTGGCAAGCAACTCGAGGATGGTCGTACTTTGTCT 1461557 Query 178092 GATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||||| || || || || || |||| Sbjct 1461558 GACTACAATATCCAAAAGGAGTCTACTCTTCA-CTTG 1461593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730058712356