Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 149 6e-31 seq4 147 2e-30 >seq1 Length=3895514 Score = 149 bits (164), Expect = 6e-31 Identities = 297/437 (68%), Gaps = 10/437 (2%) Strand=Plus/Minus Query 16675 TTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTC 16734 ||| |||||| || |||||||| || ||||| |||||||| | || || || | || Sbjct 3275036 TTGATAATCGGAGACACGTTTTTCAAAGAAGTTGGTTTTGCCTTGAAGGGAGATCATATC 3274977 Query 16735 CATGAAATCAAAAGGATTAGT--AGCTGAAAA---TATTTTAGAGTACCCCAGTTCGGCG 16789 |||||| ||||| |||||||| || || || ||| || || || || | | Sbjct 3274976 CATGAAGTCAAAGGGATTAGTGGAGTTGTAATGCTTATCTT-GA----CCAAGAGCAACC 3274922 Query 16790 ATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATA 16849 | | | ||| || |||||||| || ||||||||||| | | | ||||||| || ||| Sbjct 3274921 AAGAGACGATCGGCGACAAATTCAATGTATTGGCACATAAGCTTGGAGTTCATACCAATA 3274862 Query 16850 AGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATA 16909 ||| || || ||||| |||||||||||| ||| || || |||| |||||| ||| Sbjct 3274861 AGAGCAACAGGGAGAGCATCCGTCAAAAATTCTTGTTCAATGGCAACAGCTTCCACAATG 3274802 Query 16910 ATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCG 16969 || | || || || | ||| ||| | || ||| ||||| | ||| || Sbjct 3274801 ATTTCACGCACACGATCACTGCTAGGTTGATGATGAATATGACCAAACAATAAACAAGCA 3274742 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 || || || | || ||||| | | ||| | ||| || || || ||||| || ||| Sbjct 3274741 AAGTCAGTGTGAAGACCTTCGTCACGACAGATCAATTCATTGGAGAAGGTCAAACCAGGC 3274682 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 ||| || |||||||| | ||| || || | ||| || | ||||| ||||| ||||| Sbjct 3274681 ATCAAACCACGTTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCAGAGAAGAAGATACCT 3274622 Query 17090 TCGACGGATGCAAACGC 17106 || || | ||||| || Sbjct 3274621 TCCACAGCAGCAAAGGC 3274605 >seq4 Length=1266665 Score = 147 bits (162), Expect = 2e-30 Identities = 289/418 (69%), Gaps = 22/418 (5%) Strand=Plus/Minus Query 16688 ACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAA 16747 || || ||||| |||||||| |||||||| | ||||| || ||||| || |||||| Sbjct 715160 ACACGCTTTTCAAAAAAGTTGGTTTTGCCTTGAAGAGAGATCAGGTCCATAAAGTCAAAA 715101 Query 16748 GGATTAGTAGCTGAAA----ATATTT---TAGAGTACCCCAGTTCGGCGATTAATCTATC 16800 ||||||| || |||| || ||| | || || || | | | || | ||| Sbjct 715100 GGATTAG-AG--GAAAGGTAATGTTTGTCTTGA----CCAAGAGCAACTAGCAAGCGATC 715048 Query 16801 CGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGG 16860 || |||||||| || ||||||||||| | || | ||||| || || ||| ||||| Sbjct 715047 GGCCACAAATTCAATGTATTGGCACATCAGTTTGGCATTCATACCAATCAGAGCCACCGG 714988 Query 16861 AAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTAGCA- 16918 | ||| || ||||||||| ||| || ||| |||| ||||| ||||| | || | Sbjct 714987 TAAAGCATCTGTCAAAAATTCTTGTTCGATAGCAACGGCTTCAACGATAATTTCCAGGAC 714928 Query 16919 ACTCG--TTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGC 16976 || | || || || |||| ||| |||||| ||||| || ||||| || || Sbjct 714927 ACGAGAGTTGCTGGGTTGGTG-ATG---AAGATGACCAAACAAAAGGCATGCAAAGTCAG 714872 Query 16977 AATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTC 17036 ||| | || ||||| | ||||| ||||| || || ||||||||||| |||||| | Sbjct 714871 TATGGAGACCTTCGTCACGACTGATCAGTTCATTGGAGAATGTCAACCCAGGCATCAAAC 714812 Query 17037 CTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 | |||||||| | ||| || || | ||| || | || |||||||| || || || || Sbjct 714811 CACGTTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGGAAAAGAAGATGCCTTCCAC 714754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544991883920